相关论文: Phylogenetic Trees and the Moduli Space of n Point…

A classic problem in computational biology is constructing a phylogenetic tree given a set of distances between n species. In most cases, a tree structure is too constraining. We consider a circular split network, a generalization of a tree…

In this thesis I give a new description for the moduli space of stable n pointed curves of genus zero and explicitly specify a natural isomorphism and inverse between them that preserves many important properties. I also give a natural…

Rapid developments in genetics and biology have led to phylogenetic methods becoming an important direction in the study of cancer and viral evolution. Although our understanding of gene biology and biochemistry has increased and is…

The orientable cover of the moduli space of real genus zero algebraic curves with marked points is a compact aspherical manifold tiled by associahedra, which resolves the singularities of the space of phylogenetic trees. The resolution maps…

The space of smooth genus 0 curves in projective space has a natural smooth compactification: the moduli space of stable maps, which may be seen as the generalization of the classical space of complete conics. In arbitrary genus, no such…

The stable reduction theorem of Deligne and Mumford --- The moduli space of smooth projective curves of genus $g$ is a quasi-projective algebraic variety, but is not projective. To understand its geometry, it may be crucial to consider…

Cancers follow a clonal Darwinian evolution, with fitter subclones replacing more quiescent cells, ultimately giving rise to macroscopic disease. High-throughput genomics provides the opportunity to investigate these processes and determine…

This informal note provides some elementary examples to motivate the local structural results of [1] on the moduli space of genus one stable maps to projective space. The hope is that these examples will be helpful for graduate students to…

Phylogenetic algebraic geometry is concerned with certain complex projective algebraic varieties derived from finite trees. Real positive points on these varieties represent probabilistic models of evolution. For small trees, we recover…

We introduce a smooth projective variety $T_{d,n}$ which compactifies the space of configurations of $n$ distinct points on affine $d$-space modulo translation and homothety. The points in the boundary correspond to $n$-pointed stable…

This note is devoted to the definition of moduli spaces of rational tropical curves with n marked points. We show that this space has a structure of a smooth tropical variety of dimension n-3. We define the Deligne-Mumford compactification…

There is a canonical identification, due to the author, of a convex real projective structure on an orientable surface of genus g and a pair consisting of a conformal structure together with a holomorphic cubic differential on the surface.…

The space $ \ft_n = \C^n/\C $ of $n$ points on the line modulo translation has a natural compactification $ \overline \ft_n $ as a matroid Schubert variety. In this space, pairwise distances between points can be infinite; it is natural to…

In the last years the biregular automorphisms of the Deligne-Mumford's and Hassett's compactifications of the moduli space of n-pointed genus g smooth curves have been extensively studied by A. Bruno and the authors. In this paper we give a…

In a previous paper, we showed that the orientable cover of the moduli space of real genus zero algebraic curves with marked points is a compact aspherical manifold tiled by associahedra, which resolves the singularities of the space of…

A weighted pointed curve consists of a nodal curve and a sequence of marked smooth points, each assigned a number between zero and one. A subset of the marked points may coincide if the sum of the corresponding weights is no greater than…

Evolutionary relationships between species are represented by phylogenetic trees, but these relationships are subject to uncertainty due to the random nature of evolution. A geometry for the space of phylogenetic trees is necessary in order…

We show that the moduli space of genus zero stable maps is a real projective variety if the target space is a smooth convex real projective variety. We show that evaluation maps, forgetful maps are real morphisms. We analyze the real part…

We prove that the moduli spaces of n-pointed m-stable curves introduced in our previous paper have projective coarse moduli. We use the resulting spaces to run an analogue of the Hassett-Keel log minimal model program for the moduli space…

Projective duality identifies the moduli spaces $\mathbf{B}_n$ and $\mathbf{X}(3,n)$ parametrizing linearly general configurations of $n$ points in $\mathbb{P}^2$ and $n$ lines in the dual $\mathbb{P}^2$, respectively. The space…