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The purpose of this article is to show how the isotropy subgroup of leaf permutations on binary trees can be used to systematically identify tree-informative invariants relevant to models of phylogenetic evolution. In the quartet case, we…

Trees are partial orderings where every element has a linearly ordered set of smaller elements. We define and study several natural notions of completeness of trees, extending Dedekind completeness of linear orders and Dedekind-MacNeille…

We present a categorical model for intuitionistic linear logic where objects are polynomial diagrams and morphisms are simulation diagrams. The multiplicative structure (tensor product and its adjoint) can be defined in any locally…

We provide necessary and sufficient conditions on the unimodality of a convolution of two sequences of binomial coefficients preceded by a finite number of ones. These convolution sequences arise as as rank sequences of posets of…

The purpose of this paper is to develop a theory of bimonads and Hopf monads on arbitrary categories thus providing the possibility to transfer the essentials of the theory of Hopf algebras in vector spaces to more general settings. There…

Presentations for unbraided, braided and symmetric pseudomonoids are defined. Biequivalences characterising the semistrict bicategories generated by these presentations are proven. It is shown that these biequivalences categorify results in…

There are a dozen definitions of weak higher categories, all of which loosen the notion of composition of arrows. A new approach is presented here, where instead the notion of identity arrow is weakened -- these are tentatively called fair…

We extend the category of (super)manifolds and their smooth mappings by introducing a notion of microformal or "thick" morphisms. They are formal canonical relations of a special form, constructed with the help of formal power expansions in…

We introduce a notion of $n$-commutativity ($0\le n\le \infty$) for cosimplicial monoids in a symmetric monoidal category ${\bf V}$, where $n=0$ corresponds to just cosimplicial monoids in ${\bf V,}$ while $n=\infty$ corresponds to…

Let M be a smooth compact manifold with boundary. Under some geometric conditions on M, a homotopical model for the pair (M,boundary of M) can be recovered from the configuration category of the interior of M. The grouplike monoid of…

Game comonads provide a categorical syntax-free approach to finite model theory, and their Eilenberg-Moore coalgebras typically encode important combinatorial parameters of structures. In this paper, we develop a framework whereby the…

We show that a braided monoidal category C can be endowed with the structure of a right (and left) module category over C \times C. In fact, there is a family of such module category structures, and they are mutually isomorphic if and only…

Bilinear maps and their classifying tensor products are well-known in the theory of linear algebra, and their generalization to algebras of commutative monads is a classical result of monad theory. Motivated by constructions needed in…

In a triangulated symmetric monoidal closed category, there are natural dualities induced by the internal Hom. Given a monoidal functor f^* between two such catgories and adjoint couples (f^*,f_*) and (f_*,f^!), we prove the necessary…

A detailed proof is given of a theorem describing the centraliser of a transitive permutation group, with applications to automorphism groups of objects in various categories of maps, hypermaps, dessins, polytopes and covering spaces, where…

We introduce the concept of a dendroidal set. This is a generalization of the notion of a simplicial set, specially suited to the study of operads in the context of homotopy theory. We define a category of trees, which extends the category…

This the first of a series of articles dealing with abstract classification theory. The apparatus to assign systems of cardinal invariants to models of a first order theory (or determine its impossibility) is developed in [Sh:a]. It is…

Structure monoids and groups are algebraic invariants of equational varieties. We show how to construct presentations of these objects from coherent categorifications of equational varieties, generalising several results of Dehornoy. We…

We study the category whose objects are trees (with or without roots) and whose morphisms are contractions. We show that the corresponding contravariant module categories are Noetherian, and we study two natural families of modules over…

This article is devoted to the investigation of the deformation (twisting) of monoidal structures, such as the associativity constraint of the monoidal category and the monoidal structure of monoidal functor. The sets of twistings have a…