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Modern developments in microscopy and image processing are revolutionizing areas of physics, chemistry and biology as nanoscale objects can be tracked with unprecedented accuracy. The goal of single particle tracking is to determine the…

统计力学 · 物理学 2015-06-04 Denis Boyer , David S. Dean , Carlos Mejía-Monasterio , Gleb Oshanin

Experimental methods based on single particle tracking (SPT) are being increasingly employed in the physical and biological sciences, where nanoscale objects are visualized with high temporal and spatial resolution. SPT can probe…

统计力学 · 物理学 2015-06-12 Denis Boyer , David S. Dean , Carlos Mejía-Monasterio , Gleb Oshanin

We analyse a class of estimators of the generalized diffusion coefficient for fractional Brownian motion $B_t$ of known Hurst index $H$, based on weighted functionals of the single time square displacement. We show that for a certain choice…

统计力学 · 物理学 2015-06-12 Denis Boyer , David S. Dean , Carlos Mejia-Monasterio , Gleb Oshanin

In this paper we study the distribution function $P(u_{\alpha})$ of the estimators $u_{\alpha} \sim T^{-1} \int^T_0 \, \omega(t) \, {\bf B}^2_{t} \, dt$, which optimise the least-squares fitting of the diffusion coefficient $D_f$ of a…

统计力学 · 物理学 2015-06-12 Denis Boyer , David S. Dean , Carlos Mejia-Monasterio , Gleb Oshanin

We discuss the distribution of various estimators for extracting the diffusion constant of single Brownian trajectories obtained by fitting the squared displacement of the trajectory. The analysis of the problem can be framed in terms of…

统计力学 · 物理学 2015-05-28 Denis Boyer , David S. Dean

Single particle tracking has become a standard tool to investigate diffusive properties, especially in small systems such as biological cells. Usually the resulting time series are analyzed in terms of time averages over individual…

统计力学 · 物理学 2015-06-04 Jae-Hyung Jeon , Ralf Metzler

The movement of a particle described by Brownian motion is quantified by a single parameter, $D$, the diffusion constant. The estimation of $D$ from a discrete sequence of noisy observations is a fundamental problem in biological single…

亚细胞过程 · 定量生物学 2016-04-13 Peter K. Relich , Mark J. Olah , Patrick J. Cutler , Keith A. Lidke

The most common way of estimating the anomalous diffusion exponent from single-particle trajectories consists in a linear fitting of the dependence of the time averaged mean square displacement on the lag time at the log-log scale. However,…

数据分析、统计与概率 · 物理学 2019-01-02 Yann Lanoiselée , Denis S. Grebenkov , Grzegorz Sikora , Aleksandra Grzesiek , Agnieszka Wyłomańska

The Mean Square Displacement is a central tool in the analysis of Single Particle Tracking experiments, shedding light on various biophysical phenomena. Frequently, parameters are extracted by performing time-averages on single particle…

生物物理 · 物理学 2013-05-24 Eldad Kepten Irena Bronshtein , Yuval Garini

Anomalous diffusion has been widely observed by single particle tracking microscopy in complex systems such as biological cells. The resulting time series are usually evaluated in terms of time averages. Often anomalous diffusion is…

统计力学 · 物理学 2017-09-13 Stas Burov , Jae-Hyung Jeon , Ralf Metzler , Eli Barkai

The paper studies asymptotic properties of estimators of multidimensional stochastic differential equations driven by Brownian motions from high-frequency discrete data. Consistency and central limit properties of a class of estimators of…

统计理论 · 数学 2024-11-07 Arnab Ganguly

We investigate the ensemble and time averaged mean squared displacements for particle diffusion in a simple model for disordered media by assuming that the local diffusivity is both fluctuating in time and has a deterministic average growth…

统计力学 · 物理学 2016-10-05 A. G. Cherstvy , R. Metzler

In parallel with advances in microscale imaging techniques, the fields of biology and materials science have focused on precisely extracting particle properties based on their diffusion behavior. Although the majority of real-world…

介观与纳米尺度物理 · 物理学 2024-05-22 Kaito Takanami , Daisuke Taniguchi , Sawako Enoki , Masafumi Kuroda , Yasushi Okada , Yoshiyuki Kabashima

Let $B^{a,b}:=\{B_t^{a,b},t\geq0\}$ be a weighted fractional Brownian motion of parameters $a>-1$, $|b|<1$, $|b|<a+1$. We consider a least square-type method to estimate the drift parameter $\theta>0$ of the weighted fractional…

概率论 · 数学 2020-11-02 Abdulaziz Alsenafi , Mishari Al-Foraih , Khalifa Es-Sebaiy

We study efficiency of non-parametric estimation of diffusions (stochastic differential equations driven by Brownian motion) from long stationary trajectories. First, we introduce estimators based on conditional expectation which is…

概率论 · 数学 2021-05-26 Xi Chen , Ilya Timofeyev

In this article, we study the parameter estimation of interacting particle systems subject to the Newtonian aggregation and Brownian diffusion. Specifically, we construct an estimator $\widehat{\nu}$ with partial observed data to…

偏微分方程分析 · 数学 2018-10-11 Hui Huang , Jian-Guo Liu , Jianfeng Lu

An increasing number of experimental studies employ single particle tracking to probe the physical environment in complex systems. We here propose and discuss new methods to analyze the time series of the particle traces, in particular, for…

Brownian yet non-Gaussian diffusion has recently been observed in numerous biological and active matter system. The cause of the non-Gaussian distribution have been elaborately studied in the idea of a superstatistical dynamics or a…

统计力学 · 物理学 2021-06-02 Xudong Wang , Yao Chen

The aim of this paper is to introduce a new Monte Carlo method based on importance sampling techniques for the simulation of stochastic differential equations. The main idea is to combine random walk on squares or rectangles methods with…

概率论 · 数学 2010-10-22 Madalina Deaconu , Antoine Lejay

A Langevin process diffusing in a periodic potential landscape has a time dependent diffusion constant which means that its average mean squared displacement (MSD) only becomes linear at late times. The long time, or effective diffusion…

统计力学 · 物理学 2015-06-19 David S. Dean , Gleb Oshanin
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