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Topological data analysis can extract effective information from higher-dimensional data. Its mathematical basis is persistent homology. The persistent homology can calculate topological features at different spatiotemporal scales of the…

代数拓扑 · 数学 2023-09-29 Dinghua Shi , Zhifeng Chen , Chuang Ma , Guanrong Chen

Motivated by computational aspects of persistent homology for Vietoris-Rips filtrations, we generalize a result of Eliyahu Rips on the contractibility of Vietoris-Rips complexes of geodesic spaces for a suitable parameter depending on the…

代数拓扑 · 数学 2022-06-01 Ulrich Bauer , Fabian Roll

Topological data analysis (TDA) has established itself as a useful tool for capturing multiscale structures in complex networks, such as connected components, cycles, and cavities. Although Vietoris-Rips (VR) filtering is widely used in…

We introduce the concept of weighted persistence diagrams and develop a functorial pipeline for constructing them from finite metric measure spaces. This builds upon an existing functorial framework for generating classical persistence…

代数拓扑 · 数学 2025-04-17 Aziz Burak Gülen , Facundo Mémoli , Amit Patel

In this paper we define, implement, and investigate a simplicial complex construction for computing persistent homology of Euclidean point cloud data, which we call the Delaunay-Rips complex (DR). Assigning the Vietoris-Rips weights to…

统计计算 · 统计学 2023-03-03 Amish Mishra , Francis C. Motta

The persistent homology pipeline includes the reduction of a, so-called, boundary matrix. We extend the work of Bauer et al. (2014) and Chen et al. (2011) where they show how to use dependencies in the boundary matrix to adapt the reduction…

代数拓扑 · 数学 2017-08-17 Rodrigo Mendoza-Smith , Jared Tanner

The shadow of an abstract simplicial complex $K$ with vertices in $\mathbb{R}^N$ is a subset of $\mathbb{R}^N$ defined as the union of the convex hulls of simplices of $K$. The Vietoris--Rips complex of a metric space $(S,d)$ at scale…

代数拓扑 · 数学 2026-05-27 Rafal Komendarczyk , Sushovan Majhi , Atish Mitra

Biological and physical systems often exhibit distinct structures at different spatial/temporal scales. Persistent homology is an algebraic tool that provides a mathematical framework for analyzing the multi-scale structures frequently…

代数拓扑 · 数学 2016-02-01 Jonathan Jaquette , Miroslav Kramár

The Vietoris-Rips complex, denoted $R_\beta(X)$, of a metric space $(X,d)$ at scale $\beta$ is an abstract simplicial complex where each $k$-simplex corresponds to $(k+1)$ points of $X$ within diameter $\beta$. For any abstract simplicial…

代数拓扑 · 数学 2026-01-06 Kazuhiro Kawamura , Sushovan Majhi , Atish Mitra

\v{C}ech complexes reveal valuable topological information about point sets at a certain scale in arbitrary dimensions, but the sheer size of these complexes limits their practical impact. While recent work introduced approximation…

计算几何 · 计算机科学 2013-07-15 Michael Kerber , R. Sharathkumar

A standard way of approximating or discretizing a metric space is by taking its Rips complexes. These approximations for all parameters are often bound together into a filtration, to which we apply the fundamental group or the first…

几何拓扑 · 数学 2020-03-10 Žiga Virk

Clustering aims to form groups of similar data points in an unsupervised regime. Yet, clustering complex datasets containing critically intertwined shapes poses significant challenges. The prevailing clustering algorithms widely depend on…

机器学习 · 计算机科学 2025-05-08 Arghya Pratihar , Kushal Bose , Swagatam Das

The linear algorithm of the Wiener filter and constrained realizations (CRs) of Gaussian random fields is extended here to perform non-linear CRs. The procedure consists of: (1) Using low resolution data to constrain a high resolution…

天体物理学 · 物理学 2009-10-30 V. Bistolas , Y. Hoffman

We develop novel methods for using persistent homology to infer the homology of an unknown Riemannian manifold $(M, g)$ from a point cloud sampled from an arbitrary smooth probability density function. Standard distance-based filtered…

计算几何 · 计算机科学 2022-01-07 Abigail Hickok

We introduce a new flavor of functor cocalculus, called \emph{poset cocalculus}, as a tool for studying approximations in topological data analysis. Given a functor from a distributive lattice to a model category, poset cocalculus produces…

代数拓扑 · 数学 2025-10-08 Bjørnar Gullikstad Hem

We describe the homotopy types of Vietoris-Rips complexes of hypercube graphs at small scale parameters. In more detail, let $Q_n$ be the vertex set of the hypercube graph with $2^n$ vertices, equipped with the shortest path metric.…

组合数学 · 数学 2021-10-20 Michał Adamaszek , Henry Adams

A metric thickening of a given metric space $X$ is any metric space admitting an isometric embedding of $X$. Thickenings have found use in applications of topology to data analysis, where one may approximate the shape of a dataset via the…

度量几何 · 数学 2024-03-27 Henry Adams , Facundo Mémoli , Michael Moy , Qingsong Wang

Persistent homology provides a new approach for the topological simplification of big data via measuring the life time of intrinsic topological features in a filtration process and has found its success in scientific and engineering…

生物大分子 · 定量生物学 2014-12-09 Bao Wang , Guo-Wei Wei

Recurrent signals give rise to trajectories that repeatedly return close to earlier states in state space. Many analysis methods therefore require a principled notion of similarity between states. In practice, a recurrence threshold sets…

计算几何 · 计算机科学 2026-03-25 Omer Bahadir Eryilmaz , Cihan Katar , Max A. Little

We strengthen the usual stability theorem for Vietoris-Rips (VR) persistent homology of finite metric spaces by building upon constructions due to Usher and Zhang in the context of filtered chain complexes. The information present at the…

代数拓扑 · 数学 2025-08-22 Facundo Mémoli , Ling Zhou