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Power laws and distributions with heavy tails are common features of many experimentally studied complex systems, like the distribution of the sizes of earthquakes and solar flares, or the duration of neuronal avalanches in the brain.…

适应与自组织系统 · 物理学 2014-03-05 Dimitrije Markovic , Claudius Gros

We study the force-induced unfolding of random disordered RNA or single-stranded DNA polymers. The system undergoes a second order phase transition from a collapsed globular phase at low forces to an extensive necklace phase with a…

软凝聚态物质 · 物理学 2009-11-07 M. Mueller , F. Krzakala , M. Mezard

Discrete Floquet time crystals (DFTC) are characterized by the spontaneous breaking of the discrete time-translational invariance characteristic of Floquet driven systems. In analogy with equilibrium critical points, also time-crystalline…

统计力学 · 物理学 2023-11-17 Guido Giachetti , Andrea Solfanelli , Lorenzo Correale , Nicolò Defenu

Recent developments in extracting and processing biological and clinical data are allowing quantitative approaches to studying living systems. High-throughput sequencing, expression profiles, proteomics, and electronic health records are…

定量方法 · 定量生物学 2010-10-22 Vladimir Trifonov , Laura Pasqualucci , Riccardo Dalla-Favera , Raul Rabadan

A dynamical mean-field theory is developed to analyze stochastic single-cell dynamics of gene expression. By explicitly taking account of nonequilibrium and nonadiabatic features of the DNA state fluctuation, two-time correlation functions…

分子网络 · 定量生物学 2009-11-13 Yurie Okabe , Yuu Yagi , Masaki Sasai

The dynamical scaling for statistics of critical multifractal eigenstates proposed by Chalker is analytically verified for the critical random matrix ensemble in the limit of strong multifractality controlled by the small parameter $b\ll…

无序系统与神经网络 · 物理学 2010-10-27 V. E. Kravtsov , A. Ossipov , O. M. Yevtushenko , E. Cuevas

As is well known, structure formation in the Universe at times after decoupling can be described by hydrodynamic equations. These are shown here to be equivalent to a generalization of the stochastic Kardar--Parisi--Zhang equation with…

广义相对论与量子宇宙学 · 物理学 2009-10-28 J. F. Barbero G. , A. Dominguez , T. Goldman , J. Perez-Mercader

The free energy of looping DNA by proteins and protein complexes determines to what extent distal DNA sites can affect each other. We inferred its in vivo value through a combined computational-experimental approach for different lengths of…

生物大分子 · 定量生物学 2007-05-23 Leonor Saiz , J. Miguel Rubi , Jose M. G. Vilar

A recently developed wavelet based approach is employed to characterize the scaling behavior of spectral fluctuations of random matrix ensembles, as well as complex atomic systems. Our study clearly reveals anti-persistent behavior and…

混沌动力学 · 物理学 2009-11-11 P. Manimaran , Prasanta K. Panigrahi , P. Anantha Lakshmi

The global energy fluctuations of a low density gas granular gas in the homogeneous cooling state near its clustering instability are studied by means of molecular dynamics simulations. The relative dispersion of the fluctuations is shown…

统计力学 · 物理学 2009-11-10 J. Javier Brey , M. I. Garcia de Soria , P. Maynar , M. J. Ruiz-Montero

DNA-spools, structures in which DNA is wrapped and helically coiled onto itself or onto a protein core are ubiquitous in nature. We develop a general theory describing the non-equilibrium behavior of DNA-spools under linear tension. Two…

软凝聚态物质 · 物理学 2009-11-10 I. M. Kulic , H. Schiessel

Charge transport through a short DNA oligomer (Dickerson dodecamer) in presence of structural fluctuations is investigated using a hybrid computational methodology based on a combination of quantum mechanical electronic structure…

软凝聚态物质 · 物理学 2015-05-14 R. Gutierrez , R. Caetano , P. B. Woiczikowski , T. Kubar , M. Elstner , G. Cuniberti

The self-alignment concentrations, $c(x)$, as functions of the length, $x$, of the identically matching maximal segments in the genomes of a variety of species, typically present power-law tails extending to the largest scales, i.e., $c(x)…

种群与进化 · 定量生物学 2014-12-23 Kun Gao , HongGuang Sun , Jian-Zhou Zhu

The phase diagram of a water solution of DNA and oppositely charged spherical macroions is studied. DNA winds around spheres to form beads-on-a-string complexes resembling the chromatin 10 nm fiber. At small enough concentration of spheres…

软凝聚态物质 · 物理学 2009-11-07 Toan T. Nguyen , Boris I. Shklovskii

Dynamical criticality has been shown to enhance information processing in dynamical systems, and there is evidence for self-organized criticality in neural networks. A plausible mechanism for such self-organization is activity dependent…

适应与自组织系统 · 物理学 2012-09-18 Felix Droste , Anne-Ly Do , Thilo Gross

The complex spatiotemporal patterns of atmospheric flows resulting from the cooperative existence of fluctuations ranging in size from millimeters to thousands of kilometers are found to exhibit long-range spatial and temporal correlations…

综合物理 · 物理学 2016-11-17 A. Mary Selvam

We use a statistical model to discuss nonequilibrium fragmentation phenomena taking place in the stochastic dynamics of the log sector in log gravity. From the canonical Gibbs model, a combinatorial analysis reveals an important aspect of…

高能物理 - 理论 · 物理学 2024-10-29 Yannick Mvondo-She

We compare the properties of transmission across one-dimensional finite samples which are associated with two types of "quantum diffusion", one related to a classical chaotic dynamics, the other to a multifractal energy spectrum. We…

凝聚态物理 · 物理学 2016-08-31 Fausto Borgonovi , Italo Guarneri

The dynamics of a nonequilibrium system can become complex because the system has many components (e.g., a human brain), because the system is strongly driven from equilibrium (e.g., large Reynolds-number flows), or because the system…

chao-dyn · 物理学 2008-02-03 Henry S. Greenside

This essay is presented with two principal objectives in mind: first, to document the prevalence of fractals at all levels of the nervous system, giving credence to the notion of their functional relevance; and second, to draw attention to…

神经元与认知 · 定量生物学 2010-04-09 Gerhard Werner