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We numerically study the binary disordered Poland-Scheraga model of DNA denaturation, in the regime where the pure model displays a first order transition (loop exponent $c=2.15>2$). We use a Fixman-Freire scheme for the entropy of loops…

无序系统与神经网络 · 物理学 2007-05-23 Thomas Garel , Cecile Monthus

These notes are devoted to the statistical mechanics of directed polymers interacting with one-dimensional spatial defects. We are interested in particular in the situation where frozen disorder is present. These polymer models undergo a…

概率论 · 数学 2008-06-10 F. Toninelli

In these proceedings, we first summarize some general properties of phase transitions in the presence of quenched disorder, with emphasis on the following points: the need to distinguish typical and averaged correlations, the possible…

无序系统与神经网络 · 物理学 2008-03-12 Cecile Monthus , Thomas Garel

After a general introduction to the field, we describe some recent results concerning disorder effects on both `random walk models', where the random walk is a dynamical process generated by local transition rules, and on `polymer models',…

无序系统与神经网络 · 物理学 2007-05-23 Cecile Monthus

Disordered systems present multifractal properties at criticality. In particular, as discovered by Ludwig (A.W.W. Ludwig, Nucl. Phys. B 330, 639 (1990)) on the case of diluted two-dimensional Potts model, the moments $\bar{\rho^q(r)}$ of…

无序系统与神经网络 · 物理学 2007-08-22 Cecile Monthus , Thomas Garel

We study numerically the effect of sequence heterogeneity on the thermodynamic properties of a Poland-Scheraga model for DNA denaturation taking into account self-avoidance, i.e. with exponent c_p=2.15 for the loop length probability…

无序系统与神经网络 · 物理学 2016-05-06 Barbara Coluzzi , Edouard Yeramian

We consider disordered models of pinning of directed polymers on a defect line, including (1+1)-dimensional interface wetting models, disordered Poland--Scheraga models of DNA denaturation and other (1+d)-dimensional polymers in interaction…

无序系统与神经网络 · 物理学 2007-05-23 G. Giacomin , F. L. Toninelli

We consider wetting of a one-dimensional random walk on a half-line $x\ge 0$ in a short-ranged potential located at the origin $x=0$. We demonstrate explicitly how the presence of a quenched chemical disorder affects the pinning-depinning…

统计力学 · 物理学 2009-11-13 D. M. Gangardt , S. K. Nechaev

For the DNA denaturation transition in the presence of random contact energies, or equivalently the disordered wetting transition, we introduce a Strong Disorder Renewal Approach to construct the optimal contacts in each disordered sample…

无序系统与神经网络 · 物理学 2017-01-23 Cecile Monthus

We perform an extensive numerical study of the disordered Poland-Scheraga (PS) model for DNA denaturation in which self-avoidance is completely taken into account. In complement to our previous work, we focus here on the finite size scaling…

软凝聚态物质 · 物理学 2016-05-05 Barbara Coluzzi , Edouard Yeramian

According to recent progresses in the finite size scaling theory of disordered systems, thermodynamic observables are not self-averaging at critical points when the disorder is relevant in the Harris criterion sense. This lack of…

无序系统与神经网络 · 物理学 2007-05-23 Cecile Monthus , Thomas Garel

We consider disordered ladders of the transverse-field Ising model and study their critical properties and entanglement entropy for varying width, $w \le 20$, by numerical application of the strong disorder renormalization group method. We…

无序系统与神经网络 · 物理学 2015-05-14 Istvan A. Kovacs , Ferenc Igloi

Loops are essential secondary structure elements in folded DNA and RNA molecules and proliferate close to the melting transition. Using a theory for nucleic acid secondary structures that accounts for the logarithmic entropy c ln m for a…

统计力学 · 物理学 2011-05-02 Thomas R. Einert , Henri Orland , Roland R. Netz

We consider a general model of a disordered copolymer with adsorption. This includes, as particular cases, a generalization of the copolymer at a selective interface introduced by Garel et al. [Europhys. Lett. 8 (1989) 9--13], pinning and…

概率论 · 数学 2008-08-22 Fabio Lucio Toninelli

We consider general disordered models of pinning of directed polymers on a defect line. This class contains in particular the $(1+1)$--dimensional interface wetting model, the disordered Poland--Scheraga model of DNA denaturation and other…

概率论 · 数学 2007-05-23 G. Giacomin , F. L. Toninelli

We consider the random wetting transition on the Cayley tree, i.e. the problem of a directed polymer on the Cayley tree in the presence of random energies along the left-most bonds. In the pure case, there exists a first-order transition…

无序系统与神经网络 · 物理学 2009-03-26 Cecile Monthus , Thomas Garel

The denaturation transition of circular DNA is studied within a Poland-Scheraga type approach, generalized to account for the fact that the total linking number (LK), which measures the number of windings of one strand around the other, is…

统计力学 · 物理学 2015-06-05 Amir Bar , Alkan Kabakçıoğlu , David Mukamel

The excess adsorption $\Gamma $ in two-dimensional Ising strips $(\infty \times L)$ subject to identical boundary fields, at both one-dimensional surfaces decaying in the orthogonal direction $j$ as $-h_1j^{-p}$, is studied for various…

统计力学 · 物理学 2015-05-13 A. Drzewinski , A. Maciolek , A. Barasinski , S. Dietrich

We discuss possible mechanisms that may impact the order of the transition between denaturated and bound DNA states and lead to changes in the scaling laws that govern conformational properties of DNA strands. To this end, we re-consider…

软凝聚态物质 · 物理学 2021-04-07 Yulian Honchar , Christian von Ferber , Yurij Holovatch

One investigates the flat phase of quenched disordered polymerized membranes by means of a two-loop, weak-coupling computation performed near their upper critical dimension $D_{uc} = 4$, generalizing the one-loop computation of Morse,…

无序系统与神经网络 · 物理学 2021-03-10 O. Coquand , D. Mouhanna
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