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The mobility patterns of individuals in China during the early outbreak of the COVID-19 pandemic exhibit reversible changes -- in many regions, the mobility first decreased significantly and later restored. Based on this observation, here…

物理与社会 · 物理学 2022-10-25 Xincheng Shu , Zhongyuan Ruan

We consider the pandemic spreading of COVID-19 for some selected countries after the outbreak of the coronavirus in Wuhan City, China. We estimated the infection rate and the initial infected individuals of COVID-19 by using the officially…

In contrast to the common assumption in epidemic models that the rate of infection between individuals is constant, in reality, an individual's viral load determines their infectiousness. We compare the average and individual reproductive…

种群与进化 · 定量生物学 2021-12-07 Nicholas Landry

The Susceptible-Exposed-Infected-Recovered (SEIR) epidemiological model is one of the standard models of disease spreading. Here we analyse an extended SEIR model that accounts for asymptomatic carriers, believed to play an important role…

种群与进化 · 定量生物学 2021-01-26 Arghya Das , Abhishek Dhar , Srashti Goyal , Anupam Kundu , Saurav Pandey

In this article, we present a modification to the network-based stochastic SEIR epidemic model which allows for modifications to the underlying contact network to account for the effects of quarantine. We also discuss the changes needed to…

种群与进化 · 定量生物学 2020-08-05 Chris Groendyke , Adam Combs

We study the phase transition from the persistence phase to the extinction phase for the SIRS (susceptible/ infected/ refractory/ susceptible) model of diseases spreading on small world network. We show the effects of all the parameters…

物理与社会 · 物理学 2019-11-19 Mohammed Ali Saif

Early assessments of the spreading rate of COVID-19 were subject to significant uncertainty, as expected with limited data and difficulties in case ascertainment, but more reliable inferences can now be made. Here, we estimate from European…

Using a probability of novel encounter derived from a physical model, we augment the SIR compartmental model for disease spread. Scenarios with the same initial trajectories and identical $R_0$ values can diverge greatly depending on the…

种群与进化 · 定量生物学 2020-06-15 Peter Cotton

Infectious disease spread is a multi-scale process composed of within-host (biological) and between-host (social) drivers and disentangling them from each other is a central challenge in epidemiology. Here, we introduce VIBES, a multi-scale…

In this paper, we propose a machine learning technics and SIR models (deterministic and stochastic cases) with numerical approximations to predict the number of cases infected with the COVID-19, for both in few days and the following three…

种群与进化 · 定量生物学 2020-04-29 Babacar Mbaye Ndiaye , Lena Tendeng , Diaraf Seck

We analyse a stochastic SIS epidemic amongst a finite population partitioned into households. Since the population is finite, the epidemic will eventually go extinct, i.e., have no more infectives in the population. We study the effects of…

种群与进化 · 定量生物学 2009-08-05 Tom Britton , Peter Neal

Many disease models focus on characterizing the underlying transmission mechanism but make simple, possibly naive assumptions about how infections are reported. In this note, we use a simple deterministic Susceptible-Infected-Removed (SIR)…

种群与进化 · 定量生物学 2019-11-28 Sang Woo Park , Benjamin M. Bolker

A reaction-diffusion model was developed describing the spread of the COVID-19 virus considering the mean daily movement of susceptible, exposed and asymptomatic individuals. The model was calibrated using data on the confirmed infection…

种群与进化 · 定量生物学 2020-05-08 Youcef Mammeri

The COVID-19 pandemic highlighted the need to improve the modeling, estimation, and prediction of how infectious diseases spread. SEIR-like models have been particularly successful in providing accurate short-term predictions. This study…

种群与进化 · 定量生物学 2024-12-31 Jorge P. Zubelli , Jennifer Loria , Vinicius V. L. Albani

Traditional epidemic models consider that individual processes occur at constant rates. That is, an infected individual has a constant probability per unit time of recovering from infection after contagion. This assumption certainly fails…

种群与进化 · 定量生物学 2013-03-18 Guillermo Abramson , Sebastian Gonçalves , Marcelo F. C. Gomes

The goal of this study is to establish a general framework for predicting the so-called critical Turning Period in an infectious disease epidemic such as the COVID-19 outbreak in China early this year. This framework enabled a timely…

种群与进化 · 定量生物学 2022-10-19 George Xianzhi Yuan , Lan Di , Yudi Gu , Guoqi Qian , Xiaosong Qian

The effective control of infectious diseases relies on accurate assessment of the impact of interventions, which is often hindered by the complex dynamics of the spread of disease. A Beta-Dirichlet switching state-space transmission model…

统计方法学 · 统计学 2024-04-30 Jingxue Feng , Liangliang Wang

An epidemic disease caused by a new coronavirus has spread in Northern Italy with a strong contagion rate. We implement an SEIR model to compute the infected population and number of casualties of this epidemic. The example may ideally…

种群与进化 · 定量生物学 2020-05-12 Jose' M. Carcione , Juan E. Santos , Claudio Bagaini , Jing Ba

We study a generalization of the classical contact process (SIS epidemic model) in a directed graph $G$. Our model is a continuous-time interacting particle system in which at every time, each vertex is either healthy or infected, and each…

概率论 · 数学 2020-11-26 Shirshendu Chatterjee , David Sivakoff , Matthew Wascher

We study the random times between successive cases in a transmission chain of infectious diseases with asymptomatic carriers. We derive the probability distribution of this generation time (in days) from a discrete-time epidemic model with…

种群与进化 · 定量生物学 2026-04-16 Jordi Ripoll , Joan Saldaña