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A graph $G$ is a $k$-leaf power if there exists a tree $T$ whose leaf set is $V(G)$, and such that $uv \in E(G)$ if and only if the distance between $u$ and $v$ in $T$ is at most $k$. The graph classes of $k$-leaf powers have several…

数据结构与算法 · 计算机科学 2021-11-01 Manuel Lafond

A $k$-leaf power of a tree $T$ is a graph $G$ whose vertices are the leaves of $T$ and whose edges connect pairs of leaves whose distance in $T$ is at most $k$. A graph is a leaf power if it is a $k$-leaf power for some $k$. Over 20 years…

数据结构与算法 · 计算机科学 2022-03-10 Benjamin Bergougnoux , Svein Høgemo , Jan Arne Telle , Martin Vatshelle

The $k^{th}$-power of a given graph $G=(V,E)$ is obtained from $G$ by adding an edge between every two distinct vertices at a distance at most $k$ in $G$. We call $G$ a $k$-Steiner power if it is an induced subgraph of the $k^{th}$-power of…

计算复杂性 · 计算机科学 2019-02-05 Guillaume Ducoffe

Motivated by the problem of reconstructing evolutionary history, Nishimura et al. defined $k$-leaf powers as the class of graphs $G=(V,E)$ which has a $k$-leaf root $T$, i.e., $T$ is a tree such that the vertices of $G$ are exactly the…

组合数学 · 数学 2009-09-25 Xueliang Li , Yongtang Shi , Wenli Zhou

The $k$-leaf power graph $G$ of a tree $T$ is a graph whose vertices are the leaves of $T$ and whose edges connect pairs of leaves at unweighted distance at most~$k$ in $T$. Recognition of the $k$-leaf power graphs for $k \geq 7$ is still…

数据结构与算法 · 计算机科学 2020-08-11 David Eppstein , Elham Havvaei

A common task in phylogenetics is to find an evolutionary tree representing proximity relationships between species. This motivates the notion of leaf powers: a graph G = (V, E) is a leaf power if there exist a tree T on leafset V and a…

离散数学 · 计算机科学 2017-07-04 Manuel Lafond

The boxicity of a graph G, denoted as box(G) is defined as the minimum integer t such that G is an intersection graph of axis-parallel t-dimensional boxes. A graph G is a k-leaf power if there exists a tree T such that the leaves of the…

组合数学 · 数学 2009-02-23 L. Sunil Chandran , Mathew C. Francis , Rogers Mathew

Phylogenetic networks are a type of directed acyclic graph that represent how a set $X$ of present-day species are descended from a common ancestor by processes of speciation and reticulate evolution. In the absence of reticulate evolution,…

组合数学 · 数学 2017-08-11 Andrew Francis , Charles Semple , Mike Steel

For a non-negative integer $\ell$, the $\ell$-leaf power of a tree $T$ is a simple graph $G$ on the leaves of $T$ such that two vertices are adjacent in $G$ if and only if their distance in $T$ is at most $\ell$. We provide a polynomial…

数据结构与算法 · 计算机科学 2023-10-24 Jungho Ahn , Eduard Eiben , O-joung Kwon , Sang-il Oum

In phylogenetics, phylogenetic trees are rooted binary trees, whereas phylogenetic networks are rooted arbitrary acyclic digraphs. Edges are directed away from the root and leaves are uniquely labeled with taxa in phylogenetic networks. For…

种群与进化 · 定量生物学 2016-03-30 Andreas DM Gunawan , Bhaskar DasGupta , Louxin Zhang

The class ${\cal L}_k$ of $k$-leaf powers consists of graphs $G=(V,E)$ that have a $k$-leaf root, that is, a tree $T$ with leaf set $V$, where $xy \in E$, if and only if the $T$-distance between $x$ and $y$ is at most $k$. Structure and…

离散数学 · 计算机科学 2014-02-07 Ragnar Nevries , Christian Rosenke

A graph $G=(V,E)$ is a $k$-leaf power if there is a tree $T$ whose leaves are the vertices of $G$ with the property that a pair of leaves $u$ and $v$ induce an edge in $G$ if and only if they are distance at most $k$ apart in $T$. For $k\le…

组合数学 · 数学 2024-07-03 Max Dupré la Tour , Manuel Lafond , Ndiamé Ndiaye , Adrian Vetta

A graph G is a k-leaf power, for an integer k >= 2, if there is a tree T with leaf set V(G) such that, for all vertices x, y in V(G), the edge xy exists in G if and only if the distance between x and y in T is at most k. Such a tree T is…

组合数学 · 数学 2023-08-22 Van Bang Le , Christian Rosenke

Phylogenetic networks are directed acyclic graphs that depict the genomic evolution of related taxa. Reticulation nodes in such networks (nodes with more than one parent) represent reticulate evolutionary events, such as recombination,…

种群与进化 · 定量生物学 2024-11-21 Alexey Markin , Sriram Vijendran , Oliver Eulenstein

Phylogenetic networks are becoming of increasing interest to evolutionary biologists due to their ability to capture complex non-treelike evolutionary processes. From a combinatorial point of view, such networks are certain types of rooted…

组合数学 · 数学 2019-10-21 Katharina T. Huber , Guillaume E. Scholz

In phylogenetics, evolution is traditionally represented in a tree-like manner. However, phylogenetic networks can be more appropriate for representing evolutionary events such as hybridization, horizontal gene transfer, and others. In…

数据结构与算法 · 计算机科学 2024-10-18 Manuel Lafond , Vincent Moulton

Rooted phylogenetic networks provide an explicit representation of the evolutionary history of a set $X$ of sampled species. In contrast to phylogenetic trees which show only speciation events, networks can also accommodate reticulate…

组合数学 · 数学 2021-01-01 Peter L. Erdos , Charles Semple , Mike Steel

Phylogenetic networks are a type of leaf-labelled, acyclic, directed graph used by biologists to represent the evolutionary history of species whose past includes reticulation events. A phylogenetic network is tree-child if each non-leaf…

组合数学 · 数学 2017-11-27 Magnus Bordewich , Katharina T Huber , Vincent Moulton , Charles Semple

Evolutionary histories for species that cross with one another or exchange genetic material can be represented by leaf-labelled, directed graphs called phylogenetic networks. A major challenge in the burgeoning area of phylogenetic networks…

数据结构与算法 · 计算机科学 2021-09-24 Leo van Iersel , Sjors Kole , Vincent Moulton , Leonie Nipius

Phylogenetic networks are mathematical structures for modeling and visualization of reticulation processes in the study of evolution. Galled networks, reticulation visible networks, nearly-stable networks and stable-child networks are the…

种群与进化 · 定量生物学 2015-10-02 Andreas D. M. Gunawan , Louxin Zhang
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