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A major task of evolutionary biology is the reconstruction of phylogenetic trees from molecular data. The evolutionary model is given by a Markov chain on a tree. Given samples from the leaves of the Markov chain, the goal is to reconstruct…

概率论 · 数学 2011-09-30 Constantinos Daskalakis , Elchanan Mossel , Sebastien Roch

Background: Tree reconciliation problems have long been studied in phylogenetics. A particular variant of the reconciliation problem for a gene tree T and a species tree S assumes that for each interior vertex x of T it is known whether x…

We prove that most permutations of degree $n$ have some power which is a cycle of prime length approximately $\log n$. Explicitly, we show that for $n$ sufficiently large, the proportion of such elements is at least $1-5/\log\log n$ with…

群论 · 数学 2023-06-22 S. P. Glasby , Cheryl E. Praeger , W. R. Unger

We prove that the size of the largest common subtree between two uniform, independent, leaf-labelled random binary trees of size $n$ is typically less than $n^{1/2-\varepsilon}$ for some $\varepsilon>0$. Our proof relies on the coupling…

概率论 · 数学 2024-02-08 Thomas Budzinski , Delphin Sénizergues

A tree is scattered if no subdivision of the complete binary tree is a subtree. Building on results of Halin, Polat and Sabidussi, we identify four types of subtrees of a scattered tree and a function of the tree into the integers at least…

组合数学 · 数学 2016-10-03 Claude Laflamme , Maurice Pouzet , Norbert Sauer

We find some sufficient conditions under which the permutational wreath product of two groups has a minimal generating set. In particular we prove that for a regular rooted tree the group of all automorphisms and the group of all…

群论 · 数学 2012-10-02 Yaroslav Lavrenyuk

We prove the conjecture of A. Postnikov that (A) the number of regions in the inversion hyperplane arrangement associated with a permutation $w\in \Sn$ is at most the number of elements below $w$ in the Bruhat order, and (B) that equality…

组合数学 · 数学 2007-10-08 Axel Hultman , Svante Linusson , John Shareshian , Jonas Sjöstrand

In this paper we study binary trees with choosable edge lengths, in particular rooted binary trees with the property that the two edges leading from every non-leaf to its two children are assigned integral lengths $l_1$ and $l_2$ with…

信息论 · 计算机科学 2016-08-08 Jens Maßberg

In analogy to a concept of Fibonacci trees, we define the leaf-Fibonacci tree of size $n$ and investigate its number of nonisomorphic leaf-induced subtrees. Denote by $f_0$ the one vertex tree and $f_1$ the tree that consists of a root with…

组合数学 · 数学 2018-11-16 Audace Amen Vioutou Dossou-Olory

We study the structure of trees minimizing their number of stable sets for given order $n$ and stability number $\alpha$. Our main result is that the edges of a non-trivial extremal tree can be partitioned into $n-\alpha$ stars, each of…

组合数学 · 数学 2024-03-11 Véronique Bruyère , Gwenaël Joret , Hadrien Mélot

In this paper, we enumerate the pairs of permutations that are long cycles and whose product has a given cycle-type. Our main result is a simple relation concerning the desired numbers for a few related cycle-types. The relation refines a…

组合数学 · 数学 2020-10-09 Ricky X. F. Chen

It is shown that the maximum number of patterns that can occur in a permutation of length $n$ is asymptotically $2^n$. This significantly improves a previous result of Coleman.

组合数学 · 数学 2012-02-14 M. H. Albert , Micah Coleman , Ryan Flynn , Imre Leader

It follows from a classical result of Jordan that every tree with maximum degree at most $r$ containing a vertex set labeled by $[n]$, has a single-edge cut which separates two subsets $A,B \subset [n]$ for which $\min\{|A|,|B|\} \ge…

组合数学 · 数学 2026-02-27 Sagi Snir , Raphael Yuster

When specialized to the context of permutations, Schmerl and Trotter's Theorem states that every simple permutation which is not a parallel alternation contains a simple permutation with one fewer entry. We give an elementary proof of this…

组合数学 · 数学 2014-09-17 Robert Brignall , Vincent Vatter

Let $\mathcal D_n$ denote the average number of iterations of West's stack-sorting map $s$ that are needed to sort a permutation in $S_n$ into the identity permutation $123\cdots n$. We prove that…

组合数学 · 数学 2020-09-29 Colin Defant

We introduce regenerative tree growth processes as consistent families of random trees with n labelled leaves, n>=1, with a regenerative property at branch points. This framework includes growth processes for exchangeably labelled Markov…

概率论 · 数学 2013-09-30 Jim Pitman , Douglas Rizzolo , Matthias Winkel

In the first section of this senior thesis the author provides some new efficient algorithms for calculating with finite permutation groups. They cannot be found in the computer algebra system MAGMA, but they can be implemented there. For…

群论 · 数学 2009-04-06 Hyun Kyu Kim

Kitaev, Potapov, and Vajnovszki [On shortening u-cycles and u-words for permutations, Discrete Appl. Math, 2019] described how to shorten universal words for permutations, to length $n!+n-1-i(n-1)$ for any $i \in [(n-2)!]$, by introducing…

组合数学 · 数学 2023-08-14 Rachel Kirsch , Bernard Lidický , Clare Sibley , Elizabeth Sprangel

We construct an example of an infinite planar embedded self-similar binary tree $\Sigma$ which is the essentially unique solution to the Steiner problem of finding the shortest connection of a given planar self-similar fractal set $C$ of…

度量几何 · 数学 2025-02-20 Emanuele Paolini , Eugene Stepanov

Given a bipartite graph $H$ and an integer $n$, let $f(n;H)$ be the smallest integer such that, any set of edge disjoint copies of $H$ on $n$ vertices, can be extended to an $H$-design on at most $n+f(n;H)$ vertices. We establish tight…

组合数学 · 数学 2010-08-19 Zoltán Füredi , Ago-Erik Riet , Mykhaylo Tyomkyn
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