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Characterization of medium-range order in amorphous materials and its relation to short-range order is discussed. A new topological approach is presented here to extract a hierarchical structure of amorphous materials, which is robust…

软凝聚态物质 · 物理学 2015-02-27 Takenobu Nakamura , Yasuaki Hiraoka , Akihiko Hirata , Emerson G. Escolar , Yasumasa Nishiura

Persistent homology (PH) was applied to probe the structural changes of glasses under shear. PH associates each local atomistic structure in an atomistic configuration to a geometric object, namely, a hole, and evaluates the robustness of…

统计力学 · 物理学 2019-06-20 Tatsuhiko Shirai , Takenobu Nakamura

This article proposes a topological method that extracts hierarchical structures of various amorphous solids. The method is based on the persistence diagram (PD), a mathematical tool for capturing shapes of multiscale data. The input to the…

Ring polymers are characterized by topology-specific entanglements called threadings. In the limit of large rings, it is conjectured that a "topological glass" should emerge due to the proliferation of threadings. In this study, we used…

软凝聚态物质 · 物理学 2024-11-19 Shota Goto , Takenobu Nakamura , Davide Michieletto , Kang Kim , Nobuyuki Matubayasi

Topological data analysis (TDA) is a new emerging and powerful tool to understand the medium range structure ordering of multi-scale data. This study investigates the density anomalies observed during cooling of liquid silica from…

材料科学 · 物理学 2023-10-05 Andrea Tirelli , Kousuke Nakano

The structure of the low redshift Universe is dominated by a multi-scale void distribution delineated by filaments and walls of galaxies. The characteristics of voids; such as morphology, average density profile, and correlation function,…

宇宙学与河外天体物理 · 物理学 2024-09-04 Manu Aggarwal , Motonari Tonegawa , Stephen Appleby , Changbom Park , Vipul Periwal

Silica is the paradigmatic network glass-former and understanding its response to pressure is essential for comprehending the mechanical properties of silica-based materials and the behavior of silicate melts in the Earth's interior. While…

无序系统与神经网络 · 物理学 2025-10-16 Zhen Zhang , Zhencheng Xie , Walter Kob

Persistent Homology is a widely used topological data analysis tool that creates a concise description of the topological properties of a point cloud based on a specified filtration. Most filtrations used for persistent homology depend…

代数拓扑 · 数学 2024-06-05 Vincent P. Grande , Michael T. Schaub

Analyzing the atomic structure of glassy materials is a tremendous challenge both experimentally and computationally, and the lack of direct, detailed insights into glass structure hinders our ability to navigate structure-property…

材料科学 · 物理学 2022-08-25 Aik Rui Tan , Shingo Urata , Masatsugu Yamada , Rafael Gómez-Bombarelli

Persistent homology is a popular computational tool for analyzing the topology of point clouds, such as the presence of loops or voids. However, many real-world datasets with low intrinsic dimensionality reside in an ambient space of much…

机器学习 · 计算机科学 2024-11-01 Sebastian Damrich , Philipp Berens , Dmitry Kobak

Persistent homology (PH) studies the topology of data across multiple scales by building nested collections of topological spaces called filtrations, computing homology and returning an algebraic object that can be vizualised as a…

代数拓扑 · 数学 2024-11-14 David Beers , Heather A Harrington , Jacob Leygonie , Uzu Lim , Louis Theran

Persistent Homology (PH) is a fundamental tool in computational topology, designed to uncover the intrinsic geometric and topological features of data across multiple scales. Originating within the broader framework of Topological Data…

代数拓扑 · 数学 2025-05-13 Aurelie Jodelle Kemme , Collins Amburo Agyingi

Persistent homology (PH) is a popular tool for topological data analysis that has found applications across diverse areas of research. It provides a rigorous method to compute robust topological features in discrete experimental…

机器学习 · 计算机科学 2023-07-19 Manu Aggarwal , Vipul Periwal

The liquid crystalline compound, forming the glass of the smectic C$_A$* phase, is investigated by the X-ray diffraction in the 18-298 K range. The characteristic distances within the smectic C$_A$* phase are determined. The electron…

Persistent homology analysis, a recently developed computational method in algebraic topology, is applied to the study of the phase transitions undergone by the so-called XY-mean field model and by the phi^4 lattice model, respectively. For…

The problems of the intermediate-range atomic structure of glasses and of the mechanism for the glass transition are approached from the low-temperature end in terms of a scenario for the atomic organization that justifies the use of an…

介观与纳米尺度物理 · 物理学 2017-05-30 Giancarlo Jug

We develop an analysis pipeline for characterizing the topology of large scale structure and extracting cosmological constraints based on persistent homology. Persistent homology is a technique from topological data analysis that quantifies…

宇宙学与河外天体物理 · 物理学 2021-06-14 Matteo Biagetti , Alex Cole , Gary Shiu

This paper introduces persistent homology, which is a powerful tool to characterize the shape of data using the mathematical concept of topology. We explain the fundamental idea of persistent homology from scratch using some examples. We…

代数拓扑 · 数学 2022-05-25 Ippei Obayashi , Takenobu Nakamura , Yasuaki Hiraoka

The medium range order (MRO) in amorphous systems has been linked to complex features such as the dynamic heterogeneity of supercooled liquids or the plastic deformation of glasses. However, the nature of the MRO in these materials has…

无序系统与神经网络 · 物理学 2024-06-14 Zhen Zhang , Walter Kob

We introduce several geometric notions, including the width of a homology class, to the theory of persistent homology. These ideas provide geometric interpretations of persistence diagrams. Indeed, we give quantitative and geometric…

代数拓扑 · 数学 2022-12-27 Henry Adams , Baris Coskunuzer
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