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Topological data analysis uses tools from topology -- the mathematical area that studies shapes -- to create representations of data. In particular, in persistent homology, one studies one-parameter families of spaces associated with data,…

机器学习 · 计算机科学 2020-12-01 Guido Montúfar , Nina Otter , Yuguang Wang

Persistent topological properties of an image serve as an additional descriptor providing an insight that might not be discovered by traditional neural networks. The existing research in this area focuses primarily on efficiently…

计算机视觉与模式识别 · 计算机科学 2023-03-07 Ekaterina Khramtsova , Guido Zuccon , Xi Wang , Mahsa Baktashmotlagh

Persistent homology computes the multiscale topology of a data set by using a sequence of discrete complexes. In this paper, we propose that persistent homology may be a useful tool for studying the structure of the landscape of string…

高能物理 - 理论 · 物理学 2019-04-24 Alex Cole , Gary Shiu

Persistent Homology is a powerful tool in Topological Data Analysis (TDA) to capture topological properties of data succinctly at different spatial resolutions. For graphical data, shape, and structure of the neighborhood of individual data…

社会与信息网络 · 计算机科学 2018-11-12 Sumit Bhatia , Bapi Chatterjee , Deepak Nathani , Manohar Kaul

Persistent homology is a common technique in topological data analysis providing geometrical and topological information about the sample space. All this information, known as topological features, is summarized in persistence diagrams, and…

统计方法学 · 统计学 2022-04-05 Asael Fabian Martínez

Biomolecular structure comparison not only reveals evolutionary relationships, but also sheds light on biological functional properties. However, traditional definitions of structure or sequence similarity always involve superposition or…

定量方法 · 定量生物学 2017-07-13 Kelin Xia

Persistent homology has been widely used to discover hidden topological structures in data across various applications, including music data. To apply persistent homology, a distance or metric must be defined between points in a point cloud…

声音 · 计算机科学 2025-12-15 Eunwoo Heo , Byeongchan Choi , Myung ock Kim , Mai Lan Tran , Jae-Hun Jung

Persistent homology is a powerful tool for characterizing the topology of a data set at various geometric scales. When applied to the description of molecular structures, persistent homology can capture the multiscale geometric features and…

定量方法 · 定量生物学 2018-07-31 Zixuan Cang , Guo-Wei Wei

Persistent homology, a powerful mathematical tool for data analysis, summarizes the shape of data through tracking topological features across changes in different scales. Classical algorithms for persistent homology are often constrained…

量子物理 · 物理学 2024-02-28 Bernardo Ameneyro , George Siopsis , Vasileios Maroulas

Persistent homology probes topological properties from point clouds and functions. By looking at multiple scales simultaneously, one can record the births and deaths of topological features as the scale varies. In this paper we use a…

Many datasets can be viewed as a noisy sampling of an underlying space, and tools from topological data analysis can characterize this structure for the purpose of knowledge discovery. One such tool is persistent homology, which provides a…

The persistence barcode is a topological descriptor of data that plays a fundamental role in topological data analysis. Given a filtration of data, the persistence barcode tracks the evolution of its homology groups. In this paper, we…

计算几何 · 计算机科学 2025-10-14 Tao Hou , Salman Parsa , Bei Wang

For nearly three decades, spatial games have produced a wealth of insights to the study of behavior and its relation to population structure. However, as different rules and factors are added or altered, the dynamics of spatial models often…

计算机科学与博弈论 · 计算机科学 2021-09-30 Jakob Stenseke

Features such as photon rings, jets, or hot. spots can leave particular topological signatures in a black hole image. As such, topological data analysis can be used to characterize images resulting from high resolution observations…

高能天体物理现象 · 物理学 2022-10-11 Pierre Christian , Chi-kwan Chan , Anthony Hsu , Feryal Ozel , Dimitrios Psaltis , Iniyan Natarajan

Persistent homology provides a robust methodology to infer topological structures from point cloud data. Here we explore the persistent homology of point clouds embedded into a probabilistic setting, exploiting the theory of point…

概率论 · 数学 2023-08-07 Daniel Spitz , Anna Wienhard

Link prediction is an important learning task for graph-structured data. In this paper, we propose a novel topological approach to characterize interactions between two nodes. Our topological feature, based on the extended persistent…

机器学习 · 计算机科学 2021-06-15 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Chao Chen

We present a machine learning approach that leverages persistent homology to classify bacterial flagellar motors into two functional states: rotated and stalled. By embedding protein structural data into a topological framework, we extract…

生物大分子 · 定量生物学 2025-12-19 Zakaria Lamine , Abdelatif Hafid , Mohamed Rahouti

In topological data analysis, persistent homology is used to study the "shape of data". Persistent homology computations are completely characterized by a set of intervals called a bar code. It is often said that the long intervals…

计算几何 · 计算机科学 2025-02-19 Peter Bubenik , Michael Hull , Dhruv Patel , Benjamin Whittle

The Haldane model on the honeycomb lattice is a paradigmatic example of a Hamiltonian featuring topologically distinct phases of matter. It describes a mechanism through which a quantum Hall effect can appear as an intrinsic property of a…

On the basis of the "molecular-orbital" representation which describes generic flat-band models, we propose a systematic way to construct a class of flat-band models with finite-range hoppings that have topological natures. In these models,…

介观与纳米尺度物理 · 物理学 2020-09-30 Tomonari Mizoguchi , Yasuhiro Hatsugai