相关论文: Properties for the Frechet Mean in Billera-Holmes-…
This paper investigates the computational geometry relevant to calculations of the Frechet mean and variance for probability distributions on the phylogenetic tree space of Billera, Holmes and Vogtmann, using the theory of probability…
We describe the use of the Frechet mean and variance in the Billera-Holmes-Vogtmann (BHV) treespace to summarize and explore the diversity of a set of phylogenetic trees. We show that the Frechet mean is comparable to other summary methods,…
Samples of phylogenetic trees arise in a variety of evolutionary and biomedical applications, and the Fr\'echet mean in Billera-Holmes-Vogtmann tree space is a summary tree shown to have advantages over other mean or consensus trees.…
The geometric median as well as the Frechet mean of points in an Hadamard space are important in both theory and applications. Surprisingly, no algorithms for their computation are hitherto known. To address this issue, we use a split…
We study the geometry of metrics and convexity structures on the space of phylogenetic trees, which is here realized as the tropical linear space of all \ ultrametrics. The ${\rm CAT}(0)$-metric of Billera-Holmes-Vogtman arises from the…
Billera-Holmes-Vogtmann (BHV) tree space is a geodesic metric space of edge-weighted phylogenetic trees with a fixed leaf set. Constructing parametric distributions on this space is challenging due to its non-Euclidean geometry and the…
Fr\'echet means are a popular type of average for non-Euclidean datasets, defined as those points which minimise the average squared distance to a set of data points. We consider the behaviour of sample Fr\'echet means on normed spaces…
Recent interest in treespaces as well-founded mathematical domains for phylogenetic inference and statistical analysis for populations of anatomical trees has motivated research into efficient and rigorous methods for optimization problems…
Fr\'echet means, conceptually appealing, generalize the Euclidean expectation to general metric spaces. We explore how well Fr\'echet means can be estimated from independent and identically distributed samples and uncover a fundamental…
A central part of geometric statistics is to compute the Fr\'echet mean. This is a well-known intrinsic mean on a Riemannian manifold that minimizes the sum of squared Riemannian distances from the mean point to all other data points. The…
The Frechet mean is a useful description of location for a probability distribution on a metric space that is not necessarily a vector space. This article considers simultaneous estimation of multiple Frechet means from a decision-theoretic…
We find the equations that allow us to compute the position of the two interior nodes (weighted Fermat-Torricelli points) w.r. to the weighted Steiner problem for four points determining a tetrahedron in R^3. Furthermore, by applying the…
We consider the problem of estimating the Fr\'echet and conditional Fr\'echet mean from data taking values in separable metric spaces. Unlike Euclidean spaces, where well-established methods are available, there is no practical estimator…
Estimating the mean of a random vector from i.i.d. data has received considerable attention, and the optimal accuracy one may achieve with a given confidence is fairly well understood by now. When the data take values in more general metric…
It has been observed that the sample mean of certain probability distributions in Billera-Holmes-Vogtmann (BHV) phylogenetic spaces is confined to a lower-dimensional subspace for large enough sample size. This non-standard behavior has…
The phylogenetic tree space introduced by Billera, Holmes, and Vogtmann (BHV tree space) is a CAT(0) continuous space that represents trees with edge weights with an intrinsic geodesic distance measure. The geodesic distance measure unique…
In this short note, we study the properties of the weighted Frechet mean as a convex combination operator on an arbitrary metric space, (Y,d). We show that this binary operator is commutative, non-associative, idempotent, invariant to…
The metric space of phylogenetic trees defined by Billera, Holmes, and Vogtmann, which we refer to as BHV space, provides a natural geometric setting for describing collections of trees on the same set of taxa. However, it is sometimes…
Recent advances in deep representation learning on Riemannian manifolds extend classical deep learning operations to better capture the geometry of the manifold. One possible extension is the Fr\'echet mean, the generalization of the…
The first part of the paper studies the expression for, and the properties of, the logarithm map on an orthant space, which is a simple stratified space, with the aim of analysing Frechet means of probability measures on such a space. In…