相关论文: Eternal Family Trees and Dynamics on Unimodular Ra…
We study the enumeration of spinal tree-child phylogenetic networks, a rigid family of tree-child networks in which all internal vertices lie on a single root--to--leaf path. We provide two complementary combinatorial frameworks. First, we…
We reveal an algorithm for determining the complete prefix code irreducibility (CPC-irreducibility) of dyadic trees labeled by a finite alphabet. By introducing an extended directed graph representation of tree shift of finite type (TSFT),…
Stochasticity is introduced to a well studied class of recursively grown graphs: $(u,v)$-flower nets, which have power-law degree distributions as well as small-world properties (when $u=1$). The stochastic variant interpolates between…
Invariants for complicated objects such as those arising in phylogenetics, whether they are invariants as matrices, polynomials, or other mathematical structures, are important tools for distinguishing and working with such objects. In this…
We construct tree-decompositions of graphs that distinguish all their k-blocks and tangles of order k, for any fixed integer k. We describe a family of algorithms to construct such decompositions, seeking to maximize their diversity subject…
A class $\mathcal{G}$ of graphs is hereditary if it is closed under taking induced subgraphs. We investigate the edge-add class, $\mathcal{G}^{\mathrm{add}}$, consisting of graphs that can be made members of $\mathcal{G}$ by adding at most…
In Chapter 1 we fully characterise pairs of finite graphs which form a gap in the full homomorphism order. This leads to a simple proof of the existence of generalised duality pairs. We also discuss how such results can be carried to…
The evolution of two species with different fitness is investigated on degree-heterogeneous graphs. The population evolves either by one individual dying and being replaced by the offspring of a random neighbor (voter model (VM) dynamics)…
In mixed graphs, there are both directed and undirected edges. An extension of acyclicity to this mixed-graph setting is known as maximally ancestral graphs. This extension is of considerable interest in causal learning in the presence of…
Tree-child networks are a recently-described class of directed acyclic graphs that have risen to prominence in phylogenetics (the study of evolutionary trees and networks). Although these networks have a number of attractive mathematical…
We study a family of directed random graphs whose arcs are sampled independently of each other, and are present in the graph with a probability that depends on the attributes of the vertices involved. In particular, this family of models…
The analysis in this paper helps to explain the formation of growing networks with degree distributions that follow extended exponential or power-law tails. We present a generic model in which edge dynamics are driven by a continuous…
Rooted phylogenetic networks provide an explicit representation of the evolutionary history of a set $X$ of sampled species. In contrast to phylogenetic trees which show only speciation events, networks can also accommodate reticulate…
This paper focuses on flow-adapted point-shifts of point processes on topological groups, which map points of a point process to other points of the point process in a translation invariant way. Foliations and connected components generated…
In 1966, Cummins introduced the "tree graph": the tree graph $\mathbf{T}(G)$ of a graph $G$ (possibly infinite) has all its spanning trees as vertices, and distinct such trees correspond to adjacent vertices if they differ in just one edge,…
In this paper, we study a bipartite analogue of the `random graphs evolving by degrees' process. We are given a bipartitioned set of vertices $V$ into two disjoint parts ${L}$ and ${R}$ and possibly unequal positive constants $\alpha$ and…
In this work we continue the investigation launched in [FHR16] of the structural properties of the structural properties of the Layers model, a dependent percolation model. Given an undirected graph $G=(V,E)$ and an integer $k$, let…
We extend to infinite graphs the matroidal characterization of finite graph duality, that two graphs are dual iff they have complementary spanning trees in some common edge set. The naive infinite analogue of this fails. The key in an…
Coverings of undirected graphs are used in distributed computing, and unfoldings of directed graphs in semantics of programs. We study these two notions from a graph theoretical point of view so as to highlight their similarities, as they…
On a finite graph, there is a natural family of Boltzmann probability measures on cycle-rooted spanning forests, parametrized by weights on cycles. For a certain subclass of those weights, we construct Gibbs measures in infinite volume, as…