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We investigate the large population dynamics of a family of stochastic particle systems with three-state cyclic individual behaviour and parameter-dependent transition rates. On short time scales, the dynamics turns out to be approximated…

概率论 · 数学 2022-05-10 Julien Barré , Bastien Fernandez , Grégoire Panel

We study the synchronisation and phase-lag of fluctuations in the number of infected individuals in a network of cities between which individuals commute. The frequency and amplitude of these oscillations is known to be very well captured…

种群与进化 · 定量生物学 2012-05-23 G. Rozhnova , A. Nunes , A. J. McKane

We apply a Gaussian state formalism to track fluctuating perturbations that act on the position and momentum quadrature variables of a harmonic oscillator. Following a seminal proposal by Tsang and Caves [Phys. Rev. Lett. 105, 123601…

量子物理 · 物理学 2022-12-12 Jesper Hasseriis Mohr Jensen , Klaus Mølmer

Biochemical reaction networks in living cells usually involve reversible covalent modification of signaling molecules, such as protein phosphorylation. Under conditions of small molecule numbers, as is frequently the case in living cells,…

分子网络 · 定量生物学 2013-05-29 C. Metzner , M. Sajitz-Hermstein , M. Schmidberger , B. Fabry

The fluctuation-dissipation theorem is a cornerstone result in statistical mechanics that can be used to translate the statistics of the free natural variability of a system into information on its forced response to perturbations. By…

统计力学 · 物理学 2025-06-19 Niccolò Zagli , Matthew Colbrook , Valerio Lucarini , Igor Mezić , John Moroney

Stochastic thermodynamics of chemical reaction systems has recently gained much attention. In the present paper, we consider such an issue for a system with both oscillatory and excitable dynamics, using catalytic oxidation of carbon…

统计力学 · 物理学 2015-05-27 Ting Rao , Tiejun Xiao , Zhonghuai Hou

This paper is the second in a series devoted to the study of Langevin systems subjected to a continuous time-delayed feedback control. The goal of our previous paper [Phys. Rev. E 91, 042114 (2015)] was to derive second-law-like…

统计力学 · 物理学 2017-03-01 M. L. Rosinberg , G. Tarjus , T. Munakata

We investigate the effects of exponentially correlated noise on birhythmic van der Pol type oscillators. The analytical results are obtained applying the quasi-harmonic assumption to the Langevin equation to derive an approximated…

数据分析、统计与概率 · 物理学 2015-09-25 R. Mbakob Yonkeu , R. Yamapi , G. Filatrella , C. Tchawoua

We study an excitable active rotator with slowly adapting nonlinear feedback and noise. Depending on the adaptation and the noise level, this system may display noise-induced spiking, noise-perturbed oscillations, or stochastic busting. We…

适应与自组织系统 · 物理学 2020-08-26 Igor Franović , Serhiy Yanchuk , Sebastian Eydam , Iva Bačić , Matthias Wolfrum

We formulate and study computationally the fluctuating compressible Navier-Stokes equations for reactive multi-species fluid mixtures. We contrast two different expressions for the covariance of the stochastic chemical production rate in…

流体动力学 · 物理学 2015-05-27 A. K. Bhattacharjee , K. Balakrishnan , A. L. Garcia , J. B. Bell , A. Donev

We show that a cumulative action of noise and delayed feedback on an excitable theta-neuron leads to rather coherent stochastic bursting. An idealized point process, valid if the characteristic time scales in the problem are well-separated,…

统计力学 · 物理学 2018-11-07 Chunming Zheng , Arkady Pikovsky

A theory is formulated for time dependent fluctuations of the spectrum of a single molecule in a dynamic environment. In particular, we investigate the photon counting statistics of a single molecule undergoing a spectral diffusion process.…

统计力学 · 物理学 2007-05-23 YounJoon Jung , Eli Barkai , Robert J. Silbey

The evolution of a system of chemical reactions can be studied, in the eikonal approximation, by means of a Hamiltonian dynamical system. The fixed points of this dynamical system represent the different states in which the chemical system…

统计力学 · 物理学 2009-11-13 Carlos Escudero , Jose Angel Rodriguez

Dynamical systems with $\epsilon$ small random perturbations appear in both continuous mechanical motions and discrete stochastic chemical kinetics. The present work provides a detailed analysis of the central limit theorem (CLT), with a…

数学物理 · 物理学 2021-03-17 Yu-Chen Cheng , Hong Qian

We present a spectral-theoretic approach to time-average statistical mechanics for general, non-equilibrium initial conditions. We consider the statistics of bounded, local additive functionals of reversible as well as irreversible ergodic…

统计力学 · 物理学 2020-10-21 Alessio Lapolla , David Hartich , Aljaž Godec

The well known van Kampen system size expansion, while of rather general applicability, is shown to fail to reproduce some qualitative features of the time evolution for systems with an absorbing state, apart from a transient initial time…

统计力学 · 物理学 2015-05-20 Francesca Di Patti , Sandro Azaele , Jayanth R. Banavar , Amos Maritan

In the framework of a 1D cyclic competition model, the Rock-Paper-Scissor model, where bacteria are allowed to mutate and move in space, we study the formation of stochastic patterns, where all the bacteria species do coexist. We modelled…

统计力学 · 物理学 2014-01-20 Cianci Claudia , Timoteo Carletti

We consider different models of stochastic dissipative equations and theoretically compute the probability distribution functions (actually the associated large deviation functions) of the time averaged injected power required to sustain a…

统计力学 · 物理学 2015-06-24 Jean Farago

In the frequency power spectral density, periodic oscillations appear as a Dirac comb at integer multiples of the frequency of the period. In weakly nonlinear systems or systems close to the primary instability threshold, the periodicity…

混沌动力学 · 物理学 2026-03-27 Audun Theodorsen , Gregor Decristoforo , Odd Erik Garcia

We present a complete framework of stochastic thermodynamics for a single-mode linear optical cavity driven on resonance. We first show that the steady-state intra-cavity field follows the equilibrium Boltzmann distribution. The effective…