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With a view to connecting random mutation on the molecular level to punctuated equilibrium behavior on the phenotype level, we propose a new model for biological evolution, which incorporates random mutation and natural selection. In this…

凝聚态物理 · 物理学 2009-10-28 M. Y. Choi , H. Y. Lee , D. Kim , S. H. Park

Probabilistic cellular automata with deterministic updating are quantum systems. We employ the quantum formalism for an investigation of random probabilistic cellular automata, which start with a probability distribution over initial…

量子物理 · 物理学 2024-05-17 A. Kreuzkamp , C. Wetterich

We study the intersection points of a fixed planar curve $\Gamma$ with the nodal set of a translationally invariant and isotropic Gaussian random field $\Psi(\bi{r})$ and the zeros of its normal derivative across the curve. The intersection…

混沌动力学 · 物理学 2009-11-13 Amit Aronovitch , Uzy Smilansky

Conformational change of a DNA molecule is frequently observed in multiple biological processes and has been modelled using a chain of strongly coupled oscillators with a nonlinear bistable potential. While the mechanism and properties of…

生物物理 · 物理学 2020-08-07 Soumyadip Banerjee , Kushal Shah , Shaunak Sen

Phenomena as diverse as breeding bird populations, the size of U.S. firms, money invested in mutual funds, the GDP of individual countries and the scientific output of universities all show unusual but remarkably similar growth…

物理与社会 · 物理学 2010-05-03 Yonathan Schwarzkopf , Robert L. Axtell , J. Doyne Farmer

Understanding how stochastic and non-linear deterministic processes interact is a major challenge in population dynamics theory. After a short review, we introduce a stochastic individual-centered particle model to describe the evolution in…

概率论 · 数学 2009-06-29 Regis Ferriere , Viet Chi Tran

We study a universal object for the genealogy of a sample in populations with mutations: the critical birth-death process with Poissonian mutations, conditioned on its population size at a fixed time horizon. We show how this process arises…

概率论 · 数学 2014-07-30 G. Achaz , C. Delaporte , A. Lambert

Understanding the patterns and processes of diversification of life in the planet is a key challenge of science. The Tree of Life represents such diversification processes through the evolutionary relationships among the different taxa, and…

The competitive growth models involving only one kind of particles (CGM), are a mixture of two processes one with probability $p$ and the other with probability $1-p$. The $p-$dependance produce crossovers between two different regimes. We…

无序系统与神经网络 · 物理学 2009-11-10 D. Muraca , L. A. Braunstein , R. C. Buceta

We consider critical one dimensional quantum systems initially prepared in their groundstate and perturbed by a smooth noise coupled to the energy density. By using conformal field theory, we deduce a universal description of the…

统计力学 · 物理学 2023-04-04 Alexios Christopoulos , Pierre Le Doussal , Denis Bernard , Andrea De Luca

Non-universal dynamics is shown to occur in a one-dimensional non-equilibrium system of hard-core particles. The stochastic processes included are pair creation and annihilation (with rates e and e') and symmetric hopping rates which…

统计力学 · 物理学 2009-10-31 R. B. Stinchcombe , J. E. Santos , M. D. Grynberg

We study the stochastic evolution of four species in cyclic competition in a well mixed environment. In systems composed of a finite number $N$ of particles these simple interaction rules result in a rich variety of extinction scenarios,…

统计力学 · 物理学 2012-07-09 C. H. Durney , S. O. Case , M. Pleimling , R. K. P. Zia

The number of substitutions (of nucleotides, amino acids, ...) that take place during the evolution of a sequence is a stochastic variable of fundamental importance in the field of molecular evolution. Although the mean number of…

种群与进化 · 定量生物学 2016-02-17 Bahram Houchmandzadeh , Marcel Vallade

We perform an analytical analysis of the long-range degree correlation of the giant component in an uncorrelated random network by employing generating functions. By introducing a characteristic length, we find that a pair of nodes in the…

物理与社会 · 物理学 2020-12-14 Shogo Mizutaka , Takehisa Hasegawa

We report on an experimental observation of classical diffusion distinguishing between structural universality classes of disordered systems in one dimension. Samples of hyperuniform and short-range disorder were designed, characterized by…

介观与纳米尺度物理 · 物理学 2017-12-05 Antonios Papaioannou , Dmitry S. Novikov , Els Fieremans , Gregory S. Boutis

In order to characterise non-equilibrium growth processes, we study the behaviour of global quantities that depend in a non-trivial way on two different times. We discuss the dynamical scaling forms of global correlation and response…

统计力学 · 物理学 2015-05-19 Yen-Liang Chou , Michel Pleimling

We study the spreading of information in a wide class of quantum systems, with variable-range interactions. We show that, after a quench, it generally features a double structure, whose scaling laws are related to a set of universal…

We investigate percolation on growing networks where the evolution of connected components resembles a non-equilibrium version of the multiplicative coalescent. The supercritical $\pi> \pi_c$ regime for a host of such models was conjectured…

概率论 · 数学 2025-12-18 Sayan Banerjee , Shankar Bhamidi , Remco van der Hofstad , Rounak Ray

Unitarity of the global evolution is an extremely stringent condition on finite state models in discrete spacetime. Quantum cellular automata, in particular, are tightly constrained. In previous work we proved a simple No-go Theorem which…

量子物理 · 物理学 2008-02-03 David A. Meyer

We consider statistical tasks in high dimensions whose loss depends on the data only through its projection into a fixed-dimensional subspace spanned by the parameter vectors and certain ground truth vectors. This includes classifying…

机器学习 · 统计学 2025-12-23 Reza Gheissari , Aukosh Jagannath