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相关论文: Energy Localization in the Peyrard-Bishop DNA mode…

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The equilibrium statistical properties of DNA denaturation bubbles are examined in detail within the framework of the Peyrard-Bishop-Dauxois model. Bubble formation in homogeneous DNA is found to depend crucially on the presence of…

统计力学 · 物理学 2008-03-26 Nikos Theodorakopoulos

We present a method to obtain numerically accurate values of configurational free energies of semiflexible macromolecular systems, based on the technique of thermodynamic integration combined with normal-mode analysis of a reference system…

生物大分子 · 定量生物学 2018-10-17 Stefan M. Giovan , Robert G. Scharein , Andreas Hanke , Stephen D. Levene

At low temperature the low end of the QCD Dirac spectrum is well described by chiral random matrix theory. In contrast, at high temperature there is no similar statistical description of the spectrum. We show that at high temperature the…

高能物理 - 格点 · 物理学 2010-11-11 Tamas G. Kovacs , Ferenc Pittler

For a one dimensional half-infinite chain with diagonal disorder we calculated the ultimate at $t\to\infty$ value of the average excitation density at the edge site $D$ if at $t=0$ the excitation was localised at the edge site (Anderson' s…

无序系统与神经网络 · 物理学 2008-10-13 G. G. Kozlov

We study the spreading of initially localized excitations in 1D disordered granular crystals. We thereby investigate localization phenomena in strongly nonlinear systems, which we demonstrate to be fundamentally different from localization…

无序系统与神经网络 · 物理学 2016-02-17 Alejandro J. Martínez , P. G. Kevrekidis , Mason A. Porter

The electrical properties of DNA molecules are investigated by charge injection and electric force microscopy experiments. Prior to injection, DNA molecules exhibit a weak positively charged state. We probe the electrical behaviour of DNA…

材料科学 · 物理学 2009-11-10 Thomas Heim , Thierry Melin , Dominique Deresmes , Dominique Vuillaume

We studied how the inhomogeneity of a sequence affects the phase transition that takes place at DNA melting. Unlike previous works, which considered thermodynamic quantities averaged over many different inhomogeneous sequences, we focused…

生物物理 · 物理学 2008-03-07 Sahin Buyukdagli , Marc Joyeux

We study the energy level spacing of perturbed conformal minimal models in finite volume, considering perturbations of such models that are massive but not necessarily integrable. We compute their spectrum using a renormalization group…

统计力学 · 物理学 2015-05-18 G. P. Brandino , R. M. Konik , G. Mussardo

The damping effect to the DNA bubble is investigated within the Peyrard-Bishop model. In the continuum limit, the dynamics of the bubble of DNA is described by the damped nonlinear Schrodinger equation and studied by means of variational…

生物大分子 · 定量生物学 2012-06-25 A. Sulaiman , F. P. Zen , H. Alatas , L. T. Handoko

In this work we implement the so-called matching time estimators for estimating the entropy rate as well as the entropy production rate for symbolic sequences. These estimators are based on recurrence properties of the system, which have…

信息论 · 计算机科学 2022-01-12 R. Salgado-García

We study the propagation of very large amplitude localized excitations in a model of DNA that takes explicitly into account the helicoidal structure. These excitations represent the ``transcription bubble'', where the hydrogen bonds between…

软凝聚态物质 · 物理学 2009-10-31 Alessandro Campa

With more devices competing for limited spectrum, dynamic spectrum sharing is increasingly vulnerable to interference from unauthorized emitters. This motivates fast detection and localization of these emitters using low-cost, distributed…

信号处理 · 电气工程与系统科学 2025-12-02 H. Nazim Bicer

Topological defects in low-dimensional non-linear systems feature a sliding-to-pinning transition of relevance for a variety of research fields, ranging from biophysics to nano- and solid-state physics. We find that the dynamics after a…

量子物理 · 物理学 2020-08-12 L. Timm , H. Weimer , L. Santos , T. E. Mehlstäubler

Anderson model of noninteracting disordered electrons is studied in high spatial dimensions. We find that off-diagonal one- and two-particle propagators behave as gaussian random variables w.r.t. momentum summations. With this…

无序系统与神经网络 · 物理学 2008-09-16 V. Janis , J. Kolorenc

The melting curves of short heterogeneous DNA chains in solution are calculated on the basis of statistical thermodynamics and compared to experiments. The computation of the partition function is based on the Peyrard-Bishop hamiltonian,…

生物物理 · 物理学 2007-05-23 Alessandro Campa , Andrea Giansanti

We consider diagonal disordered one-dimensional Anderson models with an underlying periodicity. We assume the simplest periodicity, i.e., we have essentially two lattices, one that is composed of the random potentials and the other of…

无序系统与神经网络 · 物理学 2009-10-30 Michael Hilke

We study the many-body localization (MBL) properties of the Heisenberg XXZ spin-$\frac12$ chain in a random magnetic field. We prove that the system exhibits localization in any given energy interval at the bottom of the spectrum in a…

数学物理 · 物理学 2025-01-08 Alexander Elgart , Abel Klein

We characterize the disorder induced localization in momentum space for ultracold atoms in one-dimensional incommensurate lattices, according to the dual Aubry-Andr\'e model. For low disorder the system is localized in momentum space, and…

量子气体 · 物理学 2012-06-06 Marco Larcher , Michele Modugno , Franco Dalfovo

The paper uses mesoscopic, non-linear lattice dynamics based (Peyrard-Bishop-Dauxois, PBD) modeling to describe thermal properties of DNA below and near the denaturation temperature. Computationally efficient notation is introduced for the…

统计力学 · 物理学 2015-03-18 Nikos Theodorakopoulos

Quasiperiodic systems serve as fertile ground for studying localisation, due to their propensity already in one dimension to exhibit rich phase diagrams with mobility edges. The deterministic and strongly-correlated nature of the…

无序系统与神经网络 · 物理学 2021-08-11 Alexander Duthie , Sthitadhi Roy , David E. Logan