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The information regarding the structure of a single protein is encoded in the network of interacting amino acids. Considering each protein as a weighted and unweighted network of amino acids we have analyzed a total of forty nine protein…

分子网络 · 定量生物学 2015-06-26 Md. Aftabuddin , Sudip Kundu

We review the main tools which allow for the statistical characterization of weighted networks. We then present two case studies, the airline connection network and the scientific collaboration network, which are representative of critical…

统计力学 · 物理学 2009-11-10 Marc Barthelemy , Alain Barrat , Romualdo Pastor-Satorras , Alessandro Vespignani

A central claim in modern network science is that real-world networks are typically "scale free," meaning that the fraction of nodes with degree $k$ follows a power law, decaying like $k^{-\alpha}$, often with $2 < \alpha < 3$. However,…

物理与社会 · 物理学 2019-03-19 Anna D. Broido , Aaron Clauset

We demonstrate how sophisticated graph properties, such as small distances and scale-free degree distributions, arise naturally from a reinforcement mechanism on layered graphs. Every node is assigned an a-priori i.i.d. fitness with…

概率论 · 数学 2020-06-02 Markus Heydenreich , Christian Hirsch

Networks of disparate phenomena-- be it the global ecology, human social institutions, within the human brain, or in micro-scale protein interactions-- exhibit broadly consistent architectural features. To explain this, we propose a new…

物理与社会 · 物理学 2021-01-26 Keith M. Smith

The load of a node in a network is the total traffic going through it when every node pair sustains a uniform bidirectional traffic between them on shortest paths. We show that nodal load can be expressed in terms of the more elementary…

统计力学 · 物理学 2008-04-18 Elias Bareinboim , Valmir C. Barbosa

A random network is grown by introducing at unit rate randomly selected nodes on the Euclidean space. A node is randomly connected to its $i$-th predecessor of degree $k_i$ with a directed link of length $\ell$ using a probability…

统计力学 · 物理学 2009-11-07 S. S. Manna , Parongama Sen

Unlike the well-studied models of growing networks, where the dominant dynamics consist of insertions of new nodes and connections, and rewiring of existing links, we study {\em ad hoc} networks, where one also has to contend with rapid and…

无序系统与神经网络 · 物理学 2009-11-10 Nima Sarshar , Vwani Roychowdhury

Random networks with complex topology are common in Nature, describing systems as diverse as the world wide web or social and business networks. Recently, it has been demonstrated that most large networks for which topological information…

无序系统与神经网络 · 物理学 2016-08-31 Albert-Laszlo Barabasi , Reka Albert , Hawoong Jeong

Many growing networks possess accelerating statistics where the number of links added with each new node is an increasing function of network size so the total number of links increases faster than linearly with network size. In particular,…

分子网络 · 定量生物学 2017-12-22 M. J. Gagen , J. S. Mattick

We study the distribution $P(\sigma)$ of the equivalent conductance $\sigma$ for Erd\H{o}s-R\'enyi (ER) and scale-free (SF) weighted resistor networks with $N$ nodes. Each link has conductance $g\equiv e^{-ax}$, where $x$ is a random number…

A scale-free network is grown in the Euclidean space with a global directional bias. On a vertical plane, nodes are introduced at unit rate at randomly selected points and a node is allowed to be connected only to the subset of nodes which…

统计力学 · 物理学 2009-11-10 S. S. Manna , G. Mukherjee , Parongama Sen

This letter introduces a mechanism for constructing, through a process of distributed decision-making, substrates for the study of collective dynamics on extended power-law weighted networks with both a desired scaling exponent and a fixed…

物理与社会 · 物理学 2013-01-18 P. Moriano , J. Finke

A network is formed using the $N$ sites of an one-dimensional lattice in the shape of a ring as nodes and each node with the initial degree $k_{in}=2$. $N$ links are then introduced to this network, each link starts from a distinct node,…

统计力学 · 物理学 2009-11-07 G. Mukherjee , S. S. Manna

Food webs can be regarded as energy transporting networks in which the weight of each edge denotes the energy flux between two species. By investigating 21 empirical weighted food webs as energy flow networks, we found several ubiquitous…

生物物理 · 物理学 2015-03-13 Jiang Zhang , Liangpeng Guo

The scale free structure p(k)~k^{-gamma} of protein-protein interaction networks can be reproduced by a static physical model in simulation. We inspect the model theoretically, and find the key reason for the model to generate apparent…

分子网络 · 定量生物学 2015-06-26 Jingshan Zhang , Eugene I. Shakhnovich

Scale-free networks, in which the distribution of the degrees obeys a power-law, are ubiquitous in the study of complex systems. One basic network property that relates to the structure of the links found is the degree assortativity, which…

物理与社会 · 物理学 2015-06-22 Oliver Williams , Charo I. Del Genio

Empirical results show that spatial factors such as distance, population density and communication range affect our social activities, also reflected by the development of ties in social networks. This motivates the need for social network…

物理与社会 · 物理学 2020-03-04 Dong Liu , Viktoria Fodor , Lars K. Rasmussen

We present a statistical mechanics approach for the description of complex networks. We first define an energy and an entropy associated to a degree distribution which have a geometrical interpretation. Next we evaluate the distribution…

无序系统与神经网络 · 物理学 2009-11-13 Ginestra Bianconi

In the paper, we present an incremental approach in the construction of scale free networks with hidden variables. The work arises from the necessity to generate that type of networks with a given number of links instead of obtaining a…

无序系统与神经网络 · 物理学 2021-06-10 Fabio Vanni