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We demonstrate existence of a tile assembly system that self-assembles the statistically self-similar Sierpinski Triangle in the Winfree-Rothemund Tile Assembly Model. This appears to be the first paper that considers self-assembly of a…

计算复杂性 · 计算机科学 2011-07-21 Aaron Sterling

The abstract tile assembly model (aTam) is a model of DNA self-assembly. Most of the studies focus on cooperative aTAM where a form of synchronization between the tiles is possible. Simulating Turing machines is achievable in this context.…

计算复杂性 · 计算机科学 2026-05-11 Sergiu Ivanov , Damien Regnault

We prove a negative result on the power of a model of algorithmic self-assembly for which it has been notoriously difficult to find general techniques and results. Specifically, we prove that Winfree's abstract Tile Assembly Model, when…

We investigate the power of the Wang tile self-assembly model at temperature 1, a threshold value that permits attachment between any two tiles that share even a single bond. When restricted to deterministic assembly in the plane, no…

计算复杂性 · 计算机科学 2015-03-13 Matthew Cook , Yunhui Fu , Robert T. Schweller

We consider non-cooperative binding, so-called 'temperature 1', in deterministic or directed (called here confluent) tile self-assembly systems in two dimensions and show a necessary and sufficient condition for such system to have an…

计算复杂性 · 计算机科学 2022-02-11 Jérôme Durand-Lose , Hendrik Jan Hoogeboom , Nataša Jonoska

We consider non cooperative binding in so called `temperature 1', in deterministic (here called {\it confluent}) tile self-assembly systems (1-TAS) and prove the standing conjecture that such systems do not have universal computational…

计算复杂性 · 计算机科学 2019-01-25 Jérôme Durand-Lose , Hendrik Jan Hoogeboom , Nataša Jonoska

We investigate the role of nondeterminism in Winfree's abstract Tile Assembly Model (aTAM), which was conceived to model artificial molecular self-assembling systems constructed from DNA. Of particular practical importance is to find tile…

计算复杂性 · 计算机科学 2010-11-29 Nathaniel Bryans , Ehsan Chiniforooshan , David Doty , Lila Kari , Shinnosuke Seki

We consider the tile self-assembly model and how tile complexity can be eliminated by permitting the temperature of the self-assembly system to be adjusted throughout the assembly process. To do this, we propose novel techniques for…

计算复杂性 · 计算机科学 2007-05-23 Ming-Yang Kao , Robert Schweller

We prove that the number of tile types required to build squares of size n x n, in Winfree's abstract Tile Assembly Model, when restricted to using only non-cooperative tile bindings, is at least 2n-1, which is also the best known upper…

计算复杂性 · 计算机科学 2013-12-10 Pierre-Étienne Meunier

We show that the Tile Assembly Model exhibits a strong notion of universality where the goal is to give a single tile assembly system that simulates the behavior of any other tile assembly system. We give a tile assembly system that is…

计算复杂性 · 计算机科学 2016-09-08 David Doty , Jack H. Lutz , Matthew J. Patitz , Scott M. Summers , Damien Woods

This paper concerns the self-assembly of scaled-up versions of arbitrary finite shapes. We work in the multiple temperature model that was introduced by Aggarwal, Cheng, Goldwasser, Kao, and Schweller (Complexities for Generalized Models of…

计算复杂性 · 计算机科学 2009-09-30 Scott M. Summers

In this paper we demonstrate the power of a model of tile self-assembly based on active glues which can dynamically change state. We formulate the Signal-passing Tile Assembly Model (STAM), based on the model of Padilla, Liu, and Seeman to…

We prove a result which strongly hints at the computational weakness of a model of tile assembly that has so far resisted many attempts of formal analysis or positive constructions. Specifically, we prove that, in Winfree's abstract Tile…

计算复杂性 · 计算机科学 2016-10-28 Pierre-Étienne Meunier , Damien Regnault

We introduce a new model of algorithmic tile self-assembly called size-dependent assembly. In previous models, supertiles are stable when the total strength of the bonds between any two halves exceeds some constant temperature. In this…

计算几何 · 计算机科学 2015-09-24 Sándor P. Fekete , Robert T. Schweller , Andrew Winslow

We prove the computational weakness of a model of tile assembly that has so far resisted many attempts of formal analysis or positive constructions. Specifically, we prove that, in Winfree's abstract Tile Assembly Model, when restricted to…

计算复杂性 · 计算机科学 2015-07-31 Pierre-Étienne Meunier , Damien Regnault

Working in Winfree's abstract tile assembly model, we show that a constant-size tile assembly system can be programmed through relative tile concentrations to build an n x n square with high probability, for any sufficiently large n. This…

计算复杂性 · 计算机科学 2015-03-13 David Doty

We prove a Pumping Lemma for the noncooperative abstract Tile Assembly Model, a model central to the theory of algorithmic self-assembly since the beginning of the field. This theory suggests, and our result proves, that small differences…

计算复杂性 · 计算机科学 2020-02-11 Pierre-Étienne Meunier , Damien Regnault , Damien Woods

The field of algorithmic self-assembly is concerned with the computational and expressive power of nanoscale self-assembling molecular systems. In the well-studied cooperative, or temperature 2, abstract tile assembly model it is known that…

计算复杂性 · 计算机科学 2017-05-31 Pierre-Étienne Meunier , Damien Woods

In this paper we define the Dupled abstract Tile Assembly Model (DaTAM), which is a slight extension to the abstract Tile Assembly Model (aTAM) that allows for not only the standard square tiles, but also "duple" tiles which are rectangles…

新兴技术 · 计算机科学 2014-03-10 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers , Scott M. Summers

Winfree's abstract Tile Assembly Model (aTAM) is a model of molecular self-assembly of DNA complexes known as tiles, which float freely in solution and attach one at a time to a growing "seed" assembly based on specific binding sites on…

计算复杂性 · 计算机科学 2015-03-17 Ho-Lin Chen , David Doty , Shinnosuke Seki
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