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This paper introduces persistent homology, which is a powerful tool to characterize the shape of data using the mathematical concept of topology. We explain the fundamental idea of persistent homology from scratch using some examples. We…

代数拓扑 · 数学 2022-05-25 Ippei Obayashi , Takenobu Nakamura , Yasuaki Hiraoka

This paper presents a mathematically rigorous framework for brain-inspired representation learning founded on the interplay between persistent topological structures and cohomological flows. Neural computation is reformulated as the…

机器学习 · 计算机科学 2025-12-10 Preksha Girish , Rachana Mysore , Mahanthesha U , Shrey Kumar , Shipra Prashant

The Hodge decomposition is a fundamental result in differential geometry and algebraic topology, particularly in the study of differential forms on a Riemannian manifold. Despite extensive research in the past few decades,…

微分几何 · 数学 2024-08-27 Zhe Su , Yiying Tong , Guo-Wei Wei

Persistent homology, a technique from computational topology, has recently shown strong empirical performance in the context of graph classification. Being able to capture long range graph properties via higher-order topological features,…

机器学习 · 计算机科学 2024-12-20 Rubén Ballester , Bastian Rieck

Topological Data Analysis has grown in popularity in recent years as a way to apply tools from algebraic topology to large data sets. One of the main tools in topological data analysis is persistent homology. This paper uses undergraduate…

代数拓扑 · 数学 2024-06-26 Cheyne Glass , Elizabeth Vidaurre

Persistent homology is a powerful mathematical tool that summarizes useful information about the shape of data allowing one to detect persistent topological features while one adjusts the resolution. However, the computation of such…

量子物理 · 物理学 2022-03-01 Bernardo Ameneyro , Vasileios Maroulas , George Siopsis

Recent advances in topology-based modeling have accelerated progress in physical modeling and molecular studies, including applications to protein-ligand binding affinity. In this work, we introduce the Persistent Laplacian Decision Tree…

生物大分子 · 定量生物学 2024-12-25 Xingjian Xu , Jiahui Chen , Chunmei Wang

Hypergraphs are useful mathematical models for describing complex relationships among members of a structured graph, while hyperdigraphs serve as a generalization that can encode asymmetric relationships in the data. However, obtaining…

代数拓扑 · 数学 2023-04-10 Dong Chen , Jian Liu , Jie Wu , Guo-Wei Wei

Persistent homology (PH) is a recently developed theory in the field of algebraic topology to study shapes of datasets. It is an effective data analysis tool that is robust to noise and has been widely applied. We demonstrate a general…

信号处理 · 电气工程与系统科学 2020-05-05 Yu-Min Chung , Chuan-Shen Hu , Yu-Lun Lo , Hau-Tieng Wu

Persistent homology (PH) is one of the most popular tools in topological data analysis (TDA), while graph theory has had a significant impact on data science. Our earlier work introduced the persistent spectral graph (PSG) theory as a…

代数拓扑 · 数学 2020-12-22 Rui Wang , Rundong Zhao , Emily Ribando-Gros , Jiahui Chen , Yiying Tong , Guo-Wei Wei

This paper aims to discuss a method of quantifying the 'shape' of data, via a methodology called topological data analysis. The main tool within topological data analysis is persistent homology; this is a means of measuring the shape of…

代数拓扑 · 数学 2022-09-14 Tristan Gowdridge , Nikolaos Devilis , Keith Worden

We introduce Hodge Diffusion Maps, a novel manifold learning algorithm designed to analyze and extract topological information from high-dimensional data-sets. This method approximates the exterior derivative acting on differential forms,…

机器学习 · 计算机科学 2025-04-11 Alvaro Almeida Gomez , Jorge Duque Franco

Hypergraphs provide a natural framework for modeling higher-order interactions, yet their theoretical underpinnings in semi-supervised learning remain limited. We provide an asymptotic consistency analysis of variational learning on random…

机器学习 · 计算机科学 2025-11-25 Adrien Weihs , Andrea L. Bertozzi , Matthew Thorpe

The rich spectral information of the graph Laplacian has been instrumental in graph theory, machine learning, and graph signal processing for applications such as graph classification, clustering, or eigenmode analysis. Recently, the Hodge…

代数拓扑 · 数学 2024-03-27 Vincent P. Grande , Michael T. Schaub

Persistent homology (PH) is a rigorous mathematical theory that provides a robust descriptor of data in the form of persistence diagrams (PDs) which are 2D multisets of points. Their variable size makes them, however, difficult to combine…

机器学习 · 统计学 2019-06-14 Bartosz Zielinski , Michal Lipinski , Mateusz Juda , Matthias Zeppelzauer , Pawel Dlotko

Physical data are representations of the fundamental laws governing the Universe, hiding complex compositional structures often well captured by hierarchical graphs. Hyperbolic spaces are endowed with a non-Euclidean geometry that naturally…

高能物理 - 唯象学 · 物理学 2024-12-11 Nathaniel S. Woodward , Sang Eon Park , Gaia Grosso , Jeffrey Krupa , Philip Harris

Molecular representation learning plays a crucial role in AI-assisted drug discovery research. Encoding 3D molecular structures through Euclidean neural networks has become the prevailing method in the geometric deep learning community.…

机器学习 · 计算机科学 2023-03-29 Yiqun Wang , Yuning Shen , Shi Chen , Lihao Wang , Fei Ye , Hao Zhou

Data analysis that uses the output of topological data analysis as input for machine learning algorithms has been the subject of extensive research. This approach offers a means of capturing the global structure of data. Persistent homology…

机器学习 · 计算机科学 2023-10-17 Naofumi Hama

Computational topology provides a tool, persistent homology, to extract quantitative descriptors from structured objects (images, graphs, point clouds, etc). These descriptors can then be involved in optimization problems, typically as a…

计算几何 · 计算机科学 2026-03-27 Mathieu Carriere , Yuichi Ike , Théo Lacombe , Naoki Nishikawa

Persistent topological Laplacians are operators that provide persistent Betti numbers and additional multiscale geometric information through the eigenvalues of the persistent topological Laplacian matrix. We introduce a framework and novel…

代数拓扑 · 数学 2026-03-04 Benjamin Jones , Guo-Wei Wei