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Topology applied to real world data using persistent homology has started to find applications within machine learning, including deep learning. We present a differentiable topology layer that computes persistent homology based on level set…

The manifold Helmholtzian (1-Laplacian) operator $\Delta_1$ elegantly generalizes the Laplace-Beltrami operator to vector fields on a manifold $\mathcal M$. In this work, we propose the estimation of the manifold Helmholtzian from point…

机器学习 · 统计学 2023-11-01 Yu-Chia Chen , Weicheng Wu , Marina Meilă , Ioannis G. Kevrekidis

Higher-Order Hypergraph Learning (HOHL) was recently introduced as a principled alternative to classical hypergraph regularization, enforcing higher-order smoothness via powers of multiscale Laplacians induced by the hypergraph structure.…

机器学习 · 计算机科学 2025-11-25 Adrien Weihs , Andrea L. Bertozzi , Matthew Thorpe

The Persistent Homology Transform (PHT) was introduced in the field of Topological Data Analysis about 10 years ago, and has since been proven to be a very powerful descriptor of Euclidean shapes. The PHT consists of scanning a shape from…

代数拓扑 · 数学 2024-12-25 Adam Onus , Nina Otter , Renata Turkes

Information networks are becoming increasingly popular to capture complex relationships across various disciplines, such as social networks, citation networks, and biological networks. The primary challenge in this domain is measuring…

代数拓扑 · 数学 2019-07-23 Mehmet Emin Aktas , Esra Akbas , Ahmed El Fatmaoui

A central problem in data-driven scientific inquiry is how to interpret structure in noisy, high-dimensional data. Topological data analysis (TDA) provides a solution via persistent homology, which encodes features of interest as…

代数拓扑 · 数学 2026-02-04 Christian Lentz , Gregory Henselman-Petrusek , Lori Ziegelmeier

Topological data analysis (TDA) is an area of data science that focuses on using invariants from algebraic topology to provide multiscale shape descriptors for geometric data sets such as point clouds. One of the most important such…

计算几何 · 计算机科学 2023-06-21 David Loiseaux , Mathieu Carrière , Andrew J. Blumberg

Artificial intelligence-assisted drug design is revolutionizing the pharmaceutical industry. Effective molecular features are crucial for accurate machine learning predictions, and advanced mathematics plays a key role in designing these…

生物大分子 · 定量生物学 2024-08-27 Hongsong Feng , Li Shen , Jian Liu , Guo-Wei Wei

To analyze the topological properties of the given discrete data, one needs to consider a continuous transform called filtration. Persistent homology serves as a tool to track changes of homology in the filtration. The outcome of the…

最优化与控制 · 数学 2024-10-08 Keunsu Kim , Jae-Hun Jung

Topological methods can provide a way of proposing new metrics and methods of scrutinising data, that otherwise may be overlooked. In this work, a method of quantifying the shape of data, via a topic called topological data analysis will be…

机器学习 · 统计学 2022-09-25 Tristan Gowdridge , Nikolaos Dervilis , Keith Worden

Representation learning on graphs is a fundamental problem that can be crucial in various tasks. Graph neural networks, the dominant approach for graph representation learning, are limited in their representation power. Therefore, it can be…

机器学习 · 计算机科学 2025-01-17 Zuoyu Yan , Qi Zhao , Ze Ye , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen

Persistent Homology is a widely used topological data analysis tool that creates a concise description of the topological properties of a point cloud based on a specified filtration. Most filtrations used for persistent homology depend…

代数拓扑 · 数学 2024-06-05 Vincent P. Grande , Michael T. Schaub

Persistent homology provides a new approach for the topological simplification of big data via measuring the life time of intrinsic topological features in a filtration process and has found its success in scientific and engineering…

生物大分子 · 定量生物学 2014-12-09 Bao Wang , Guo-Wei Wei

Persistent homology is a popular tool in Topological Data Analysis. It provides numerical characteristics of data sets which reflect global geometric properties. In order to be useful in practice, for example for feature generation in…

计算几何 · 计算机科学 2020-02-17 Boris Goldfarb

Persistent homology (PH) is a method for generating topology-inspired representations of data. Empirical studies that investigate the properties of PH, such as its sensitivity to perturbations or ability to detect a feature of interest,…

代数拓扑 · 数学 2024-03-05 Shuang Liang , Renata Turkeš , Jiayi Li , Nina Otter , Guido Montúfar

Topological Data Analysis (TDA) combines computational topology and data science to extract and analyze intrinsic topological and geometric structures in data set in a metric space. While the persistent homology (PH), a widely used tool in…

计算几何 · 计算机科学 2025-04-15 Chuanshen Hu , Yu Wang , Kelin Xia , Ke Ye , Yipeng Zhang

Topological Machine Learning (TML) is an emerging field that leverages techniques from algebraic topology to analyze complex data structures in ways that traditional machine learning methods may not capture. This tutorial provides a…

机器学习 · 计算机科学 2024-09-05 Baris Coskunuzer , Cüneyt Gürcan Akçora

Topological data analysis is becoming increasingly relevant to support the analysis of unstructured data sets. A common assumption in data analysis is that the data set is a sample---not necessarily a uniform one---of some high-dimensional…

代数拓扑 · 数学 2021-01-20 Bastian Rieck , Markus Banagl , Filip Sadlo , Heike Leitte

In this paper we introduce a statistic, the persistent homology transform (PHT), to model surfaces in $\mathbb{R}^3$ and shapes in $\mathbb{R}^2$. This statistic is a collection of persistence diagrams - multiscale topological summaries…

统计理论 · 数学 2014-07-16 Katharine Turner , Sayan Mukherjee , Doug M Boyer

Time dependence is a universal phenomenon in nature, and a variety of mathematical models in terms of dynamical systems have been developed to understand the time-dependent behavior of real-world problems. Originally constructed to analyze…

代数拓扑 · 数学 2018-02-14 Zixuan Cang , Elizabeth Munch , Guo-Wei Wei