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We address the problem of estimating topological features from data in high dimensional Euclidean spaces under the manifold assumption. Our approach is based on the computation of persistent homology of the space of data points endowed with…

机器学习 · 统计学 2023-01-23 Ximena Fernández , Eugenio Borghini , Gabriel Mindlin , Pablo Groisman

Persistent homology analysis, a recently developed computational method in algebraic topology, is applied to the study of the phase transitions undergone by the so-called XY-mean field model and by the phi^4 lattice model, respectively. For…

Machine learning for point clouds has been attracting much attention, with many applications in various fields, such as shape recognition and material science. For enhancing the accuracy of such machine learning methods, it is often…

机器学习 · 计算机科学 2023-12-29 Naoki Nishikawa , Yuichi Ike , Kenji Yamanishi

In this paper, we study solution operators of physical field equations on geometric meshes from a function-space perspective. We reveal that Hodge orthogonality fundamentally resolves spectral interference by isolating unlearnable…

机器学习 · 计算机科学 2026-05-14 Dongzhe Zheng , Tao Zhong , Christine Allen-Blanchette

Recent years have witnessed an increased interest in the application of persistent homology, a topological tool for data analysis, to machine learning problems. Persistent homology is known for its ability to numerically characterize the…

神经与进化计算 · 计算机科学 2016-08-29 Jen-Yu Liu , Shyh-Kang Jeng , Yi-Hsuan Yang

Topological Data Analysis (TDA) allows us to extract powerful topological and higher-order information on the global shape of a data set or point cloud. Tools like Persistent Homology or the Euler Transform give a single complex description…

代数拓扑 · 数学 2025-11-04 Vincent P. Grande , Michael T. Schaub

Topological data analysis uses tools from topology -- the mathematical area that studies shapes -- to create representations of data. In particular, in persistent homology, one studies one-parameter families of spaces associated with data,…

机器学习 · 计算机科学 2020-12-01 Guido Montúfar , Nina Otter , Yuguang Wang

This study proposes a novel heterogeneous graph convolutional neural network (HGCNN) to handle complex brain fMRI data at regional and across-region levels. We introduce a generic formulation of spectral filters on heterogeneous graphs by…

计算机视觉与模式识别 · 计算机科学 2023-02-24 Jinghan Huang , Moo K. Chung , Anqi Qiu

Recently, persistent homology has had tremendous success in biomolecular data analysis. It works by examining the topological relationship or connectivity of a group of atoms in a molecule at a variety of scales, then rendering a family of…

生物大分子 · 定量生物学 2019-03-27 David Bramer , Guo-Wei Wei

In this paper we define, implement, and investigate a simplicial complex construction for computing persistent homology of Euclidean point cloud data, which we call the Delaunay-Rips complex (DR). Assigning the Vietoris-Rips weights to…

统计计算 · 统计学 2023-03-03 Amish Mishra , Francis C. Motta

Graph Laplacians as well as related spectral inequalities and (co-)homology provide a foray into discrete analogues of Riemannian manifolds, providing a rich interplay between combinatorics, geometry and theoretical physics. We apply some…

组合数学 · 数学 2020-07-01 Yang-Hui He , Shing-Tung Yau

A fundamental tool in topological data analysis is persistent homology, which allows extraction of information from complex datasets in a robust way. Persistent homology assigns a module over a principal ideal domain to a one-parameter…

代数拓扑 · 数学 2019-06-19 Heather A. Harrington , Nina Otter , Hal Schenck , Ulrike Tillmann

Topological methods are very rarely used in structural health monitoring (SHM), or indeed in structural dynamics generally, especially when considering the structure and topology of observed data. Topological methods can provide a way of…

人机交互 · 计算机科学 2022-09-14 Tristan Gowdridge , Nikolaos Dervilis , Keith Worden

High-quality training data is the foundation of machine learning and artificial intelligence, shaping how models learn and perform. Although much is known about what types of data are effective for training, the impact of the data's…

机器学习 · 计算机科学 2025-10-21 Yang Ba , Mohammad Sadeq Abolhasani , Rong Pan

We present a machine learning approach that leverages persistent homology to classify bacterial flagellar motors into two functional states: rotated and stalled. By embedding protein structural data into a topological framework, we extract…

生物大分子 · 定量生物学 2025-12-19 Zakaria Lamine , Abdelatif Hafid , Mohamed Rahouti

We present a new technique that enables manifold learning to accurately embed data manifolds that contain holes, without discarding any topological information. Manifold learning aims to embed high dimensional data into a lower dimensional…

机器人学 · 计算机科学 2022-03-11 Thomas Cohn , Nikhil Devraj , Odest Chadwicke Jenkins

Persistent homology is an important methodology in topological data analysis which adapts theory from algebraic topology to data settings. Computing persistent homology produces persistence diagrams, which have been successfully used in…

机器学习 · 统计学 2026-01-13 Yueqi Cao , Anthea Monod

Topological data analysis provides a set of tools to uncover low-dimensional structure in noisy point clouds. Prominent amongst the tools is persistence homology, which summarizes birth-death times of homological features using data objects…

统计方法学 · 统计学 2024-02-05 James Matuk , Sebastian Kurtek , Karthik Bharath

We study the grokking phenomenon through the lens of topology. Using persistent homology on point clouds derived from the embedding matrices of a range of models trained on modular arithmetic with varying primes, we identify a clear and…

机器学习 · 计算机科学 2026-05-08 Yifan Tang , Qiquan Wang , Inés García-Redondo , Anthea Monod

In this paper, we systematically review weighted persistent homology (WPH) models and their applications in biomolecular data analysis. Essentially, the weight value, which reflects physical, chemical and biological properties, can be…

生物大分子 · 定量生物学 2019-03-08 Zhenyu Meng , D Vijay Anand , Yunpeng Lu , Jie Wu , Kelin Xia