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相关论文: Understanding Multistationarity of Fully Open Reac…

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This article characterizes certain small multistationary chemical reaction networks. We consider the set of fully open networks, those for which all chemical species participate in inflow and outflow, containing one non-flow (reversible or…

动力系统 · 数学 2013-01-18 Badal Joshi

Which reaction networks, when taken with mass-action kinetics, have the capacity for multiple steady states? There is no complete answer to this question, but over the last 40 years various criteria have been developed that can answer this…

动力系统 · 数学 2015-08-21 Badal Joshi , Anne Shiu

This work addresses whether a reaction network, taken with mass-action kinetics, is multistationary, that is, admits more than one positive steady state in some stoichiometric compatibility class. We build on previous work on the effect…

分子网络 · 定量生物学 2019-08-27 AmirHosein Sadeghimanesh , Elisenda Feliu

We consider a natural class of reaction networks which consist of reactions where either two species can inactivate each other (i.e., sequestration), or some species can be transformed into another (i.e., transmutation), in a way that gives…

动力系统 · 数学 2022-04-12 Gheorghe Craciun , Badal Joshi , Casian Pantea , Ike Tan

We characterize completely the capacity for (nondegenerate) multistationarity of mass action reaction networks with one-dimensional stoichiometric subspace in terms of reaction structure. Specifically, we show that networks with two or more…

动力系统 · 数学 2022-08-15 Casian Pantea , Galyna Voitiuk

Reaction networks taken with mass-action kinetics arise in many settings, from epidemiology to population biology to systems of chemical reactions. Bistable reaction networks are posited to underlie biochemical switches, which motivates the…

动力系统 · 数学 2016-09-20 Badal Joshi , Anne Shiu

Bistability is ubiquitous in biological systems. For example, bistability is found in many reaction networks that involve the control and execution of important biological functions, such as signalling processes. Positive feedback loops,…

分子网络 · 定量生物学 2014-10-29 Elisenda Feliu , Carsten Wiuf

Many dynamical systems arising in biology and other areas exhibit multistationarity (two or more positive steady states with the same conserved quantities). Although deciding multistationarity for a polynomial dynamical system is an…

分子网络 · 定量生物学 2019-02-08 Alicia Dickenstein , Mercedes Perez Millan , Anne Shiu , Xiaoxian Tang

Multistationary chemical reaction networks are of interest to scientists and mathematicians alike. While some criteria for multistationarity exist, obtaining explicit reaction rates and steady states that exhibit multistationarity for a…

动力系统 · 数学 2016-04-22 Bryan Félix , Anne Shiu , Zev Woodstock

We study the multistationarity for the reaction networks with one-dimensional stoichiometric subspaces, and we focus on the networks admitting finitely many positive steady states. We prove that if a network admits multistationarity, then…

动力系统 · 数学 2021-08-24 Kexin Lin , Xiaoxian Tang , Zhishuo Zhang

The goal of this paper is to gather and develop some necessary and sufficient criteria for injectivity and multistationarity in vector fields associated with a chemical reaction network under a variety of more or less general assumptions on…

动力系统 · 数学 2016-10-28 Murad Banaji , Casian Pantea

Stochastic reaction networks are mathematical models with a wide range of applications in biochemistry, ecology, and epidemiology, and are often complex to analyze. Except for some special cases, it is generally difficult to predict how the…

概率论 · 数学 2026-04-02 Daniele Cappelletti , Giulio Cuniberti , Paola Siri

We present a systematic mathematical analysis of the qualitative steady-state response to rate perturbations in large classes of reaction networks. This includes multimolecular reactions and allows for catalysis, enzymatic reactions,…

动力系统 · 数学 2017-11-22 Bernhard Brehm , Bernold Fiedler

A multistationarity region is the part of a reaction network's parameter space that gives rise to multiple steady states. Mathematically, this region consists of the positive parameters for which a parametrized family of polynomial…

动力系统 · 数学 2024-04-08 Allison McClure , Anne Shiu

Chemical reaction systems are dynamical systems that arise in chemical engineering and systems biology. In this work, we consider the question of whether the minimal (in a precise sense) multistationary chemical reaction networks, which we…

动力系统 · 数学 2012-07-10 Badal Joshi , Anne Shiu

Reaction networks are widely used models to describe biochemical processes. Stochastic fluctuations in the counts of biological macromolecules have amplified consequences due to their small population sizes. This makes it necessary to favor…

概率论 · 数学 2022-02-28 Daniele Cappelletti , Badal Joshi

Bistability and multistationarity are properties of reaction networks linked to switch-like responses and connected to cell memory and cell decision making. Determining whether and when a network exhibits bistability is a hard and open…

代数几何 · 数学 2018-12-20 Elisenda Feliu , Martin Helmer

We study stationary distributions in the context of stochastic reaction networks. In particular, we are interested in complex balanced reaction networks and reduction of such networks by assuming a set of species (called non-interacting…

概率论 · 数学 2024-02-06 Linard Hoessly , Carsten Wiuf , Panqiu Xia

We address several questions in reduced versus extended networks via the elimination or addition of intermediate complexes in the framework of chemical reaction networks with mass-action kinetics. We clarify and extend advances in the…

分子网络 · 定量生物学 2023-10-13 Alicia Dickenstein , Magalí Giaroli , Mercedes Pérez Millán , Rick Rischter

The development of chemical reaction models aids understanding and prediction in areas ranging from biology to electrochemistry and combustion. A systematic approach to building reaction network models uses observational data not only to…

计算工程、金融与科学 · 计算机科学 2019-01-23 Nikhil Galagali , Youssef M. Marzouk
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