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Compartmental models are popular in the mathematics of epidemiology for their simplicity and wide range of applications. Although they are typically solved as initial value problems for a system of ordinary differential equations, the…

种群与进化 · 定量生物学 2022-10-12 Eduard Campillo-Funollet , Hayley Wragg , James Van Yperen , Duc-Lam Duong , Anotida Madzvamuse

The integration of empirical data in computational frameworks to model the spread of infectious diseases poses challenges that are becoming pressing with the increasing availability of high-resolution information on human mobility and…

种群与进化 · 定量生物学 2013-04-24 Anna Machens , Francesco Gesualdo , Caterina Rizzo , Alberto E Tozzi , Alain Barrat , Ciro Cattuto

We consider the Susceptible-Infected-Recovered (SIR) epidemic model on a Euclidean network in one dimension in which nodes at a distance $l$ are connected with probability $P(l) \propto l^{-\delta}$ in addition to nearest neighbors. The…

物理与社会 · 物理学 2014-07-04 Abdul Khaleque , Parongama Sen

An epidemic model where disease transmission can occur either through global contacts or through local, nearest neighbor interactions is considered. The classical SIR--model describing the global interactions is extended by adding…

种群与进化 · 定量生物学 2022-02-02 Thomas Götz

We study the susceptible-infected-susceptible (SIS) model on directed complex networks within the quenched mean-field approximation. Combining results from random matrix theory with an analytic approach to the distribution of fixed-point…

物理与社会 · 物理学 2025-12-12 Vinícius B. Müller , Fernando L. Metz

We present a stochastic model for two successive SIR (Susceptible, Infectious, Recovered) epidemics in the same network structured population. Individuals infected during the first epidemic might have (partial) immunity for the second one.…

种群与进化 · 定量生物学 2024-10-29 Frank Ball , Abid Ali Lashari , David Sirl , Pieter Trapman

This paper presents a discrete time probabilistic dynamic for simulating a contact-based epidemic spreading based on discrete time Markov chain process, in particular the attention is addressed to the susceptible-infectious-removed (SIR)…

物理与社会 · 物理学 2017-12-22 Fabrizio Angaroni

We study the datafor the cumulative as well as daily number of cases in the Covid-19 outbreak in China. The cumulative data can be fit to an empirical form obtained from a Susceptible-Infected-Removed (SIR) model studied on an Euclidean…

物理与社会 · 物理学 2020-03-17 Kathakali Biswas , Abdul Khaleque , Parongama Sen

The COVID-19 pandemic highlighted the need to improve the modeling, estimation, and prediction of how infectious diseases spread. SEIR-like models have been particularly successful in providing accurate short-term predictions. This study…

种群与进化 · 定量生物学 2024-12-31 Jorge P. Zubelli , Jennifer Loria , Vinicius V. L. Albani

This study presents a new approach to determine the likelihood of asymptomatic carriers of the SARS-CoV-2 virus by using interaction-based continuous learning and inference of individual probability (CLIIP) for contagious ranking. This…

社会与信息网络 · 计算机科学 2021-02-02 Shangching Liu , Koyun Liu , Hwaihai Chiang , Jianwei Zhang , Tsungyao Chang

We study extensions of the classical SIR model of epidemic spread. First, we consider a single population modified SIR epidemics model in which the contact rate is allowed to be an arbitrary function of the fraction of susceptible and…

动力系统 · 数学 2021-12-17 Martina Alutto , Giacomo Como , Fabio Fagnani

Epidemic models currently play a central role in our attempts to understand and control infectious diseases. Here, we derive a model for the diffusion limit of stochastic susceptible-infectious-removed (SIR) epidemic dynamics on a…

种群与进化 · 定量生物学 2013-09-30 Matthew Graham , Thomas House

The Susceptible-Infectious-Recovered (SIR) model is the canonical model of epidemics of infections that make people immune upon recovery. Many of the open questions in computational epidemiology concern the underlying contact structure's…

物理与社会 · 物理学 2021-06-09 Petter Holme

The Susceptible-Infected-Recovered (SIR) model is the cornerstone of epidemiological models. However, this specification depends on two parameters only, which implies a lack of flexibility and the difficulty to replicate the volatile…

种群与进化 · 定量生物学 2020-11-17 Christian Gourieroux , Yang Lu

The spread of an epidemic process is considered in the context of a spatial SIR stochastic model that includes a parameter $0\le p\le 1$ that assigns weights $p$ and $1- p$ to global and local infective contacts respectively. The model was…

种群与进化 · 定量生物学 2020-01-29 Gabriel Fabricius , Alberto Maltz

We study the problem of identifying infection sources in a network based on the network topology, and a subset of infection timestamps. In the case of a single infection source in a tree network, we derive the maximum likelihood estimator…

社会与信息网络 · 计算机科学 2019-03-06 Wenchang Tang , Feng Ji , Wee Peng Tay

We consider Susceptible-Infected-Recovered (SIR) models on dense dynamic random graphs, in which the joint dynamics of vertices and edges are co-evolutionary, i.e., they influence each other bidirectionally. In particular, edges appear and…

Recent years have seen a large amount of interest in epidemics on networks as a way of representing the complex structure of contacts capable of spreading infections through the modern human population. The configuration model is a popular…

种群与进化 · 定量生物学 2017-01-23 Frank Ball , Thomas House

We consider an SIR epidemic model propagating on a configuration model network, where the degree distribution of the vertices is given and where the edges are randomly matched. The evolution of the epidemic is summed up into three…

Infectious disease superspreading caused by heterogeneity in contact behavior has been observed to be an important determinant of epidemic dynamics and size in both empirical and theoretical settings. However, it has also been observed that…