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Persistent homology is a mathematical tool used for studying the shape of data by extracting its topological features. It has gained popularity in network science due to its applicability in various network mining problems, including…

代数拓扑 · 数学 2023-06-21 Mehmet Emin Aktas , Thu Nguyen , Rakin Riza , Muhammad Ifte Islam , Esra Akbas

In this paper we explain how to convert discrete invariants into stable ones via what we call hierarchical stabilization. We illustrate this process by constructing stable invariants for multi-parameter persistence modules with respect to…

代数拓扑 · 数学 2021-04-15 Oliver Gäfvert , Wojciech Chachólski

Spatial relationships in multi-species data can indicate and affect system outcomes and behaviors, ranging from disease progression in cancer to coral reef resilience in ecology; therefore, quantifying these relationships is an important…

In topological data analysis (TDA), one often studies the shape of data by constructing a filtered topological space, whose structure is then examined using persistent homology. However, a single filtered space often does not adequately…

代数拓扑 · 数学 2023-03-14 Magnus Bakke Botnan , Michael Lesnick

Spatial transcriptomics studies are becoming increasingly large and commonplace, necessitating simultaneous analysis of a large number of spatially resolved variables. Correspondingly, a diverse range of methodologies have been proposed to…

定量方法 · 定量生物学 2025-09-09 James Boyle , Gregory Hamm , Eleanor Williams , Robin JG Hartman , Magnus Soderburg , Ian Henry , Michael Casey

We study the persistent homology of both functional data on compact topological spaces and structural data presented as compact metric measure spaces. One of our goals is to define persistent homology so as to capture primarily properties…

代数拓扑 · 数学 2018-11-27 Haibin Hang , Facundo Mémoli , Washington Mio

Network centrality measures play a crucial role in understanding graph structures, assessing the importance of nodes, paths, or cycles based on directed or reciprocal interactions encoded by vertices and edges. Estrada and Ross extended…

计算几何 · 计算机科学 2024-04-26 John Rick D. Manzanares , Paul Samuel P. Ignacio

Art is a deeply personal and expressive medium, where each artist brings their own style, technique, and cultural background into their work. Traditionally, identifying artistic styles has been the job of art historians or critics, relying…

计算机视觉与模式识别 · 计算机科学 2025-11-24 Reetikaa Reddy Munnangi , Barbara Giunti

Proposing scoring functions to effectively understand, analyze and learn various properties of high dimensional hidden representations of large-scale transformer models like BERT can be a challenging task. In this work, we explore a new…

机器学习 · 计算机科学 2022-11-01 Jatin Chauhan , Manohar Kaul

Two-dimensional (2D) particle systems, such as magnetic skyrmions, exhibit topological phase transitions between unique 2D phases. However, a simple and computationally efficient methodology to capture lattice configurational properties and…

Persistent homology (PH) is an approach to topological data analysis (TDA) that computes multi-scale topologically invariant properties of high-dimensional data that are robust to noise. While PH has revealed useful patterns across various…

机器学习 · 计算机科学 2021-03-23 Manu Aggarwal , Vipul Periwal

Multidimensional persistence studies topological features of shapes by analyzing the lower level sets of vector-valued functions. The rank invariant completely determines the multidimensional analogue of persistent homology groups. We prove…

代数拓扑 · 数学 2009-08-04 Andrea Cerri , Barbara Di Fabio , Massimo Ferri , Patrizio Frosini , Claudia Landi

Persistent homology is a relatively new tool often used for \emph{qualitative} analysis of intrinsic topological features in images and data originated from scientific and engineering applications. In this paper, we report novel…

生物大分子 · 定量生物学 2014-12-09 Kelin Xia , Xin Feng , Yiying Tong , Guo Wei We

In this study, we present a novel computational method for generating molecular fingerprints using multiparameter persistent homology (MPPH). This technique holds considerable significance for drug discovery and materials science, where…

机器学习 · 计算机科学 2023-12-14 Andac Demir , Francis Prael , Bulent Kiziltan

Persistent homology (PH) is a powerful mathematical method to automatically extract relevant insights from images, such as those obtained by high-resolution imaging devices like electron microscopes or new-generation telescopes. However,…

分布式、并行与集群计算 · 计算机科学 2024-04-15 Riccardo Ceccaroni , Lorenzo Di Rocco , Umberto Ferraro Petrillo , Pierpaolo Brutti

Persistent Homology is a widely used topological data analysis tool that creates a concise description of the topological properties of a point cloud based on a specified filtration. Most filtrations used for persistent homology depend…

代数拓扑 · 数学 2024-06-05 Vincent P. Grande , Michael T. Schaub

The field of mathematical morphology offers well-studied techniques for image processing. In this work, we view morphological operations through the lens of persistent homology, a tool at the heart of the field of topological data analysis.…

计算几何 · 计算机科学 2021-03-25 Yu-Min Chung , Sarah Day , Chuan-Shen Hu

The Persistent Homology Transform (PHT) was introduced in the field of Topological Data Analysis about 10 years ago, and has since been proven to be a very powerful descriptor of Euclidean shapes. The PHT consists of scanning a shape from…

代数拓扑 · 数学 2024-12-25 Adam Onus , Nina Otter , Renata Turkes

Persistence homology is a tool used to measure topological features that are present in data sets and functions. Persistence pairs births and deaths of these features as we iterate through the sublevel sets of the data or function of…

计算几何 · 计算机科学 2010-02-10 Brittany Terese Fasy

We propose a study of multipartite entanglement through persistent homology, a tool used in topological data analysis. In persistent homology, a 1-parameter filtration of simplicial complexes called persistence complex is used to reveal…

量子物理 · 物理学 2024-06-05 Gregory A. Hamilton , Felix Leditzky