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We give a constructive method for realizing an arbitrary directed graph (with no one-cycles) as a heteroclinic or an excitable dynamic network in the phase space of a system of coupled cells of two types. In each case, the system is…

适应与自组织系统 · 物理学 2015-12-17 Peter Ashwin , Claire Postlethwaite

Cities are living organisms. They are out of equilibrium, open systems that never stop developing and sometimes die. The local geography can be compared to a shell constraining its development. In brief, a city's current layout is a step in…

适应与自组织系统 · 物理学 2015-05-20 Thomas Courtat , Catherine Gloaguen , Stephane Douady

Extending our previous work on 2D growth for the Laplace equation we study here {\it multidimensional} growth for {\it arbitrary elliptic} equations, describing inhomogeneous and anisotropic pattern formations processes. We find that these…

patt-sol · 物理学 2009-10-22 Mark B. Mineev--Weinstein

A connection is established between discrete stochastic model describing microscopic motion of fluctuating cells, and macroscopic equations describing dynamics of cellular density. Cells move towards chemical gradient (process called…

生物物理 · 物理学 2010-05-18 Pavel M. Lushnikov , Nan Chen , Mark Alber

Adhesive cell-substrate interactions are crucial for cell motility and are responsible for the necessary traction that propels cells. These interactions can also change the shape of the cell, analogous to liquid droplet wetting on adhesive…

The formation of gaps in the endothelium is a crucial process underlying both cancer and immune cell extravasation, contributing to the functioning of the immune system during infection, the unfavorable development of chronic inflammation…

Tissues are subjected to large external forces and undergo global deformations during morphogenesis. We use synthetic analogues of tissues to study the impact of cell-cell adhesion on the response of cohesive cellular assemblies under such…

We study the dynamics of two particles that interact only when in contact. In this sense, although not in every particular, the interactions mimic those in granular materials. The detailed solution of the dynamics allows an analysis of the…

统计力学 · 物理学 2009-11-10 Alexandre Rosas , J. Buceta , Katja Lindenberg

Morphogenesis involves complex shape changes of biological tissues. Yet, tissue shape changes depend on tissue rheology, which in turn arises from the interplay of large numbers of cells. Here, we link cell- and tissue-scale mechanics by…

软凝聚态物质 · 物理学 2026-02-27 Shalabh Kumar Anand , Matthias Merkel

We consider a thin droplet that spreads over a flat, horizontal and chemically heterogeneous surface. The droplet is subjected to changes in its volume though a prescribed, arbitrary spatiotemporal function, which varies slowly and vanishes…

流体动力学 · 物理学 2021-12-21 Nikos Savva , Danny Groves

Adhesive contact between a thin elastic sheet and a substrate in a liquid environment arises in a range of biological, physical and technological applications. By considering the dynamics of this process that naturally couples fluid flow,…

流体动力学 · 物理学 2015-08-26 Andreas Carlson , Shreyas Mandre , L. Mahadevan

The emergence of collective dynamics in neural networks is a mechanism of the animal and human brain for information processing. In this paper, we develop a computational technique using distributed processing elements in a complex network,…

人工智能 · 计算机科学 2018-02-20 Filipe Alves Neto Verri , Paulo Roberto Urio , Liang Zhao

We investigate dynamics and interactions of particles levitated and trapped by the thermophoretic force in a vacuum cell. Our analysis is based on footage taken by orthogonal cameras that are able to capture the three dimensional…

软凝聚态物质 · 物理学 2017-09-26 Benjamin Foster , Frankie Fung , Connor Fieweger , Mykhaylo Usatyuk , Anita Gaj , B. J. DeSalvo , Cheng Chin

Epigenetic Tracking is a mathematical model of biological cells, originally conceived to study embryonic development. Computer simulations proved the capacity of the model to generate complex 3-dimensional cellular structures, and the…

细胞行为 · 定量生物学 2015-07-07 Alessandro Fontana

A general framework for performing event-driven simulations of systems with semi-flexible or rigid bodies interacting under impulsive torques and forces is outlined. Two different approaches are presented. In the first, the dynamics and…

Angiogenesis is the process by which blood vessels form from pre-existing vessels. It plays a key role in many biological processes, including embryonic development and wound healing, and contributes to many diseases including cancer and…

定量方法 · 定量生物学 2021-09-15 John T. Nardini , Bernadette J. Stolz , Kevin B. Flores , Heather A. Harrington , Helen M. Byrne

We investigate through numerical simulations the hydrodynamic interactions between two rigid spherical particles suspended on the axis of a cylindrical tube filled with an elastoviscoplastic fluid subjected to pressure-driven flow. The…

流体动力学 · 物理学 2025-05-14 Giancarlo Esposito , John Tsamopoulos , Massimiliano Maria Villone , Gaetano D'Avino

We study glass behavior in a mixture of elliptic and circular particles in two dimensions at low temperatures using an orientation-dependent Lennard-Jones potential. The ellipses have a mild aspect ratio ($\sim 1.2$) and tend to align at…

软凝聚态物质 · 物理学 2013-11-01 Kyohei Takae , Akira Onuki

Empirical data on the dynamics of human face-to-face interactions across a variety of social venues have recently revealed a number of context-independent structural and temporal properties of human contact networks. This universality…

物理与社会 · 物理学 2016-07-13 Michele Starnini , Andrea Baronchelli , Romualdo Pastor-Satorras

Phase separating systems that are maintained away from thermodynamic equilibrium via molecular processes represent a class of active systems, which we call active emulsions. These systems are driven by external energy input for example…

软凝聚态物质 · 物理学 2019-06-07 Christoph A. Weber , David Zwicker , Frank Jülicher , Chiu Fan Lee