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In the growth of bacterial colonies, a great variety of complex patterns are observed in experiments, depending on external conditions and the bacterial species. Typically, existing models employ systems of reaction-diffusion equations or…

生物物理 · 物理学 2019-11-12 Lautaro Vassallo , David Hansmann , Lidia A. Braunstein

We investigate the occurrence of waterlike thermodynamic and dynamic anomalous behavior in a one dimensional lattice gas model. The system thermodynamics is obtained using the transfer matrix technique and anomalies on density and…

We study the self-assembly of colloidal microgel particles at a quasi-two-dimensional air-water interface of a drying droplet. Using bright-field microscopy, we demonstrate that increasing particle elasticity drives interfacial organization…

软凝聚态物质 · 物理学 2026-03-10 Vaibhav Raj Singh Parmar , Sayantan Chanda , Rituparno Mandal , Ranjini Bandyopadhyay

Experiments and theory have shown that cell monolayers and epithelial tissues exhibit solid-liquid and glass-liquid transitions. These transitions are biologically relevant to our understanding of embryonic development, wound healing, and…

软凝聚态物质 · 物理学 2020-07-22 Benjamin Loewe , Michael Chiang , Davide Marenduzzo , M. Cristina Marchetti

We present a theory to investigate electro-kinetic behavior, namely, electrorotation and dielectrophoresis under alternating current (AC) applied fields for a pair of touching inhomogeneous colloidal particles and biological cells. These…

软凝聚态物质 · 物理学 2007-05-23 J. P. Huang , Mikko Karttunen , K. W. Yu , L. Dong , G. Q. Gu

We study glass transitions in mixtures of elliptic and circular particles in two dimensions using an orientation-dependent Lennard-Jones potential. Changing anisotropic parameters of the potential, the size ratio, and the concentration, we…

软凝聚态物质 · 物理学 2013-05-21 Kyohei Takae , Akira Onuki

A new suggestion for pattern formation in biological systems is proposed. The interaction of two signaling pathways provides complex patterning. The interaction of two pathways involves few of the biochemical complexities of the pathways.…

生物物理 · 物理学 2009-11-10 Frederick W. Cummings

In this article, we describe the instability of a contact line under nonequilibrium conditions mainly based on the results of our recent studies. Two experimental examples are presented: the self-propelled motion of a liquid droplet and…

流体动力学 · 物理学 2012-08-23 Yong-Jun Chen , Kenichi Yoshikawa

Cell shape is determined by a balance of intrinsic properties of the cell as well as its mechanochemical environment. Inhomogeneous shape changes underly many morphogenetic events and involve spatial gradients in active cellular forces…

生物物理 · 物理学 2018-04-04 Kinjal Dasbiswas , Edouard Hannezo , Nir. S. Gov

This paper reports a numerical study of complex classical trajectories of a particle in an elliptic potential. This study of doubly-periodic potentials is a natural sequel to earlier work on complex classical trajectories in trigonometric…

高能物理 - 理论 · 物理学 2010-05-12 Carl M. Bender , Daniel W. Hook , Karta Singh Kooner

In living cells, molecular motors create activity that enhances the diffusion of particles throughout the cytoplasm, and not just ones attached to the motors. We demonstrate initial steps toward creating artificial cells that mimic this…

软凝聚态物质 · 物理学 2019-05-01 Viva R. Horowitz , Zachary C. Chambers , İrep Gözen , Thomas G. Dimiduk , Vinothan N. Manoharan

In this paper we present an individual-based mechanical model that describes the dynamics of two contiguous cell populations with different proliferative and mechanical characteristics. An off-lattice modelling approach is considered…

偏微分方程分析 · 数学 2020-01-14 Tommaso Lorenzi , Philip J. Murray , Mariya Ptashnyk

We introduce a formalism for the geometry of eukaryotic cells and organisms.Cells are taken to be star-convex with good biological reason. This allows for a convenient description of their extent in space as well as all manner of cell…

其他定量生物学 · 定量生物学 2014-10-03 Nadya Morozova , Robert Penner

We investigate the effects of cell division and apopotosis on collective dynamics in two-dimensional epithelial tissues. Our model includes three key ingredients observed across many epithelia, namely cell-cell adhesion, cell death and a…

软凝聚态物质 · 物理学 2017-04-18 D. A. Matoz-Fernandez , K. Martens , Rastko Sknepnek , J. L. Barrat , S. Henkes

Fluid deformable surfaces are ubiquitous in cell and tissue biology, including lipid bilayers, the actomyosin cortex, or epithelial cell sheets. These interfaces exhibit a complex interplay between elasticity, low Reynolds number…

流体动力学 · 物理学 2019-06-12 Alejandro Torres-Sánchez , Daniel Millán , Marino Arroyo

The motion of noncircular two-dimensional vortices is shown to depend on a form of coupling between vortex ellipticity and the gradient of fluid density. The approach is based on the perspective that an elliptic vortex can be described as…

流体动力学 · 物理学 2021-09-29 Jasmine M. Andersen , Andrew A. Voitiv , Mark E. Siemens , Mark T. Lusk

Constancy of life vitally depends on the internalization of particles through biomembranes. Of particular interest, cellular uptake, including phagocytosis, receptor-mediated endocytosis, and membrane fusion, critically depends on the…

软凝聚态物质 · 物理学 2026-01-07 Amir Khosravanizadeh , Pierre Sens , Farshid Mohammad-Rafiee

The cell membrane deforms during endocytosis to surround extracellular material and draw it into the cell. Experiments on endocytosis in yeast all agree that (i) actin polymerizes into a network of filaments exerting active forces on the…

细胞行为 · 定量生物学 2015-04-07 T. Zhang , R. Sknepnek , M. J. Bowick , J. M. Schwarz

Cells self-organize into functional, ordered structures during tissue morphogenesis, a process that is evocative of colloidal self-assembly into engineered soft materials. Understanding how inter-cellular mechanical interactions may drive…

Recent advances in micro- and nano-technologies allow the construction of complex active systems from biological and synthetic materials. An interesting example is active vesicles, which consist of a membrane enclosing self-propelled…

软凝聚态物质 · 物理学 2024-06-04 Priyanka Iyer , Gerhard Gompper , Dmitry A. Fedosov