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Topologically ordered phases of matter display a number of unique characteristics, including ground states that can be interpreted as patterns of closed strings. In this paper, we consider the problem of detecting and distinguishing closed…

统计力学 · 物理学 2022-09-16 Dan Sehayek , Roger G. Melko

Persistent homology (PH) provides topological descriptors for geometric data, such as weighted graphs, which are interpretable, stable to perturbations, and invariant under, e.g., relabeling. Most applications of PH focus on the…

机器学习 · 计算机科学 2024-02-08 David Loiseaux , Luis Scoccola , Mathieu Carrière , Magnus Bakke Botnan , Steve Oudot

We introduce harmonic persistent homology spaces for filtrations of finite simplicial complexes. As a result we can associate concrete subspaces of cycles to each bar of the barcode of the filtration. We prove stability of the harmonic…

代数拓扑 · 数学 2024-12-30 Saugata Basu , Nathanael Cox

Let $K$ be a finite simplicial, cubical, delta or CW complex. The persistence map $\mathrm{PH}$ takes a filter $f:K \rightarrow \mathbb{R}$ as input and returns the barcodes $\mathrm{PH}(f)$ of the associated sublevel set persistent…

计算几何 · 计算机科学 2021-10-29 Jacob Leygonie , Gregory Henselman-Petrusek

We develop a method for analyzing spatial and spatiotemporal anomalies in geospatial data using topological data analysis (TDA). To do this, we use persistent homology (PH), which allows one to algorithmically detect geometric voids in a…

物理与社会 · 物理学 2022-03-01 Abigail Hickok , Deanna Needell , Mason A. Porter

The Persistent Homology Transform (PHT) summarizes a shape in $\mathbb{R}^m$ by collecting persistence diagrams obtained from linear height filtrations in all directions on $\mathbb{S}^{m-1}$. It enjoys strong theoretical guarantees,…

计算几何 · 计算机科学 2026-04-10 Michael Kerber , Elena Xinyi Wang

High-accuracy prediction of the physical properties of amorphous materials is challenging in condensed-matter physics. A promising method to achieve this is machine-learning potentials, which is an alternative to computationally demanding…

机器学习 · 计算机科学 2023-05-23 Emi Minamitani , Ippei Obayashi , Koji Shimizu , Satoshi Watanabe

This paper is a survey of persistent homology, primarily as it is used in topological data analysis. It includes the theory of persistence modules, as well as stability theorems for persistence barcodes, generalized persistence,…

代数拓扑 · 数学 2020-04-03 Gunnar Carlsson

Persistent Homology (PH) is a useful tool to study the underlying structure of a data set. Persistence Diagrams (PDs), which are 2D multisets of points, are a concise summary of the information found by studying the PH of a data set.…

计算几何 · 计算机科学 2020-11-24 Megan Johnson , Jae-Hun Jung

Data analysis that uses the output of topological data analysis as input for machine learning algorithms has been the subject of extensive research. This approach offers a means of capturing the global structure of data. Persistent homology…

机器学习 · 计算机科学 2023-10-17 Naofumi Hama

The field of mathematical morphology offers well-studied techniques for image processing. In this work, we view morphological operations through the lens of persistent homology, a tool at the heart of the field of topological data analysis.…

计算几何 · 计算机科学 2021-03-25 Yu-Min Chung , Sarah Day , Chuan-Shen Hu

Port-Hamiltonian (PH) systems provide a framework for modeling, analysis and control of complex dynamical systems, where the complexity might result from multi-physical couplings, non-trivial domains and diverse nonlinearities. A major…

动力系统 · 数学 2024-03-15 Philipp L. Kinon , Tobias Thoma , Peter Betsch , Paul Kotyczka

Persistent homology is a popular data analysis technique that is used to capture the changing topology of a filtration associated with some simplicial complex $K$. These topological changes are summarized in persistence diagrams. We propose…

计算几何 · 计算机科学 2018-10-11 Tamal K. Dey , Ryan Slechta

To analyze the topological properties of the given discrete data, one needs to consider a continuous transform called filtration. Persistent homology serves as a tool to track changes of homology in the filtration. The outcome of the…

最优化与控制 · 数学 2024-10-08 Keunsu Kim , Jae-Hun Jung

Multiplexed imaging allows multiple cell types to be simultaneously visualised in a single tissue sample, generating unprecedented amounts of spatially-resolved, biological data. In topological data analysis, persistent homology provides…

0-dimensional persistent homology is known, from a computational point of view, as the easy case. Indeed, given a list of $n$ edges in non-decreasing order of filtration value, one only needs a union-find data structure to keep track of the…

计算几何 · 计算机科学 2023-12-12 Marc Glisse

Persistent homology (PH) is an approach to topological data analysis (TDA) that computes multi-scale topologically invariant properties of high-dimensional data that are robust to noise. While PH has revealed useful patterns across various…

机器学习 · 计算机科学 2021-03-23 Manu Aggarwal , Vipul Periwal

Many datasets can be viewed as a noisy sampling of an underlying space, and tools from topological data analysis can characterize this structure for the purpose of knowledge discovery. One such tool is persistent homology, which provides a…

Persistent homology theory is a relatively new but powerful method in data analysis. Using simplicial complexes, classical persistent homology is able to reveal high dimensional geometric structures of datasets, and represent them as…

代数拓扑 · 数学 2023-12-05 Yaru Gao , Yan Xu , Fengchun Lei

The persistence barcode is a topological descriptor of data that plays a fundamental role in topological data analysis. Given a filtration of the space of data, a persistence barcode tracks the evolution of its homological features. In this…

计算几何 · 计算机科学 2024-09-11 Salman Parsa , Bei Wang