相关论文: Chern-Simons-Higgs Model as a Theory of Protein Mo…

The theory of elastic rods can be used to describe certain geometric and topological properties of the DNA molecules. A similar effective field theory approach was previously suggested to describe the conformations and dynamics of proteins.…

We present a model, based on symmetry and geometry, for proteins. Using elementary ideas from mathematics and physics, we derive the geometries of discrete helices and sheets. We postulate a compatible solvent-mediated emergent pairwise…

There are two natural Chern-Simons theories associated with the embedding of a three-dimensional surface in Euclidean space; one is constructed using the induced metric connection -- it involves only the intrinsic geometry, the other is…

We discuss the gauge field theory approach to protein structure study, which allows a natural way to introduce collective degrees of freedom and nonlinear topological structures. Local symmetry of proteins and its breaking in the medium is…

By using the gauge-invariant but path-dependent, variables formalism, we consider a recently proposed topologically massive $U{\left( 1 \right)_{\cal W}} \times U{(1)_{\cal Y}}$ Chern-Simons-Higgs theory in $2+1$ dimensions. In particular,…

We study the effect of a Chern-Simons (CS) term in the phase structure of two different Abelian gauge theories. For the compact Maxwell-Chern-Simons theory, we obtain that for values $g=n/2\pi$ of the CS coupling with $n=\pm 1,\pm 2$, the…

Proteins are linear chain molecules that play a central role in life and health. Protein native state folds are modular assemblies of space-filling building blocks of {\alpha}-helices, \{beta}-sheets and tight turns. Here we deduce the…

The intricate three-dimensional geometries of protein tertiary structures underlie protein function and emerge through a folding process from one-dimensional chains of amino acids. The exact spatial sequence and configuration of amino…

In this paper, we show how to discretize the abelian Chern-Simons gauge theory on generic planar lattices/graphs (with or without translational symmetries) embedded in arbitrary 2D closed orientable manifolds. We find that, as long as a…

We study a three-dimensional symmetric Chern-Simons field theory with a general covariance and it turns out that the original Chern-Simons theory is just a gauge fixed action of the symmetric Chern-Simons theory whose constraint algebra…

We propose a model of quantum gravity in arbitrary dimensions defined in terms of the BV quantization of a supersymmetric, infinite dimensional matrix model. This gives an (AKSZ-type) Chern-Simons theory with gauge algebra the space of…

We study the electrodynamics of generic charged particles (bosons, fermions, relativistic or not) constrained to move on an infinite plane. An effective gauge theory in 2+1 dimensional spacetime which describes the real electromagnetic…

Quantum electrodynamics (QED) of electrons confined in a plane and that yet can undergo interactions mediated by an unconstrained photon has been described by the so-called {\it pseudo-QED} (PQED), the (2+1)-dimensional version of the…

We show that the classical non-abelian pure Chern-Simons action is related to nonrelativistic models in (2+1)-dimensions, via reductions of the gauge connection in Hermitian symmetric spaces. In such models the matter fields are coupled to…

Tha quantum electrodynamics of particles constrained to move on a plane is not a fully dimensionally reduced theory because the gauge fields through which they interact live in higher dimensions. By constraining the gauge field to the…

Proteins need to selectively interact with specific targets among a multitude of similar molecules in the cell. But despite a firm physical understanding of binding interactions, we lack a general theory of how proteins evolve high…

In this paper, we discuss how gauging one-form symmetries in Chern-Simons theories is implemented in an A-twisted topological open string theory. For example, the contribution from a fixed H/Z bundle on a three-manifold M, arising in a BZ…

We consider the geometric quantisation of Chern--Simons theory for closed genus-one surfaces and semisimple complex groups. First we introduce the natural complexified analogue of the Hitchin connection in K\"{a}hler quantisation, with…

Subject of this work is a class of Chern-Simons field theories with non-semisimple gauge group, which may well be considered as the most straightforward generalization of an Abelian Chern-Simons field theory. As a matter of fact these…

Abelian Chern-Simons-Maxwell theory can emerge from the bosonisation of the 2+1-dimensional Thirring model that describes interacting Dirac fermions. Here we show how the Thirring model manifests itself in the low energy limit of a…