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The phase of Quasi-Linkage Equilibrium (QLE) in evolutionary populations is analogous to the thermal equilibrium state in statistical mechanics, a concept pioneered by Kimura in 1965 for two-locus two-allele models. QLE describes a…

种群与进化 · 定量生物学 2026-05-22 Yu-Han Huang , Bastien Dumont , Hong-Li Zeng , John Barton , Erik Aurell

M. Kruskal showed that each nearly-periodic dynamical system admits a formal $U(1)$ symmetry, generated by the so-called roto-rate. We prove that such systems also admit nearly-invariant manifolds of each order, near which rapid…

动力系统 · 数学 2021-09-29 J. W. Burby , E. Hirvijoki

A heterodimensional cycle is an invariant set of a dynamical system consisting of two hyperbolic periodic orbits with different dimensions of their unstable manifolds and a pair of orbits that connect them. For systems which are at least…

动力系统 · 数学 2024-04-11 Dongchen Li , Dmitry Turaev

We consider an array of nearest-neighbor coupled nonlinear autonomous oscillators with quenched random frequencies and purely conservative coupling. We show that global phase-locked states emerge in finite lattices and study numerically…

混沌动力学 · 物理学 2022-01-26 Stefano Lepri , Arkady Pikovsky

Evolution is simultaneously driven by a number of processes such as mutation, competition and random sampling. Understanding which of these processes is dominating the collective evolutionary dynamics in dependence on system properties is a…

种群与进化 · 定量生物学 2012-09-13 Hinrich Arnoldt , Marc Timme , Stefan Grosskinsky

Using coherent states as initial states, we investigate the quantum dynamics of the Lipkin-Meshkov-Glick (LMG) and Dicke models in the semi-classical limit. They are representative models of bounded systems with one- and two-degrees of…

We study the quasi-stationary evolution of systems where an energetic confinement is unable to completely retain their constituents. It is performed an extensive numerical study of a gas whose dynamics is driven by binary encounters and its…

统计力学 · 物理学 2007-05-23 L. Velazquez , H. Mosquera Cuesta , F. Guzman

There is a renewed interest in the derivation of statistical mechanics from the dynamics of closed quantum systems. A central part of this program is to understand how far-from-equilibrium closed quantum system can behave as if relaxing to…

We study a class of multi-species birth-and-death processes going almost surely to extinction and admitting a unique quasi-stationary distribution (qsd for short). When rescaled by $K$ and in the limit $K\to+\infty$, the realizations of…

概率论 · 数学 2020-06-22 J. -R. Chazottes , P. Collet , S. Martínez , S. Méléard

This paper is devoted to the study of the stability of limit cycles of a nonlinear delay differential equation with a distributed delay. The equation arises from a model of population dynamics describing the evolution of a pluripotent stem…

偏微分方程分析 · 数学 2009-04-17 Mostafa Adimy , Fabien Crauste , Andrei Halanay , Mihaela Neamtu , Dumitru Opris

A heterodimensional cycle consists of a pair of heteroclinic connections between two saddle periodic orbits with unstable manifolds of different dimensions. Recent theoretical work on chaotic dynamics beyond the uniformly hyperbolic setting…

动力系统 · 数学 2019-06-28 Andy Hammerlindl , Bernd Krauskopf , Gemma Mason , Hinke M. Osinga

We investigate the stability properties of two different classes of metabolic cycles using a combination of analytical and computational methods. Using principles from structural kinetic modeling (SKM), we show that the stability of…

分子网络 · 定量生物学 2010-07-29 Ed Reznik , Daniel Segrè

We suggest a natural approach that leads to a modification of classical quasispecies models and incorporates the possibility of population extinction in addition to growth. The resulting modified models are called open. Their essential…

种群与进化 · 定量生物学 2019-03-25 Ivan Yegorov , Artem S. Novozhilov , Alexander S. Bratus

We present a dynamical system that naturally exhibits two unstable attractors that are completely enclosed by each others basin volume. This counter-intuitive phenomenon occurs in networks of pulse-coupled oscillators with delayed…

混沌动力学 · 物理学 2008-12-09 Christoph Kirst , Marc Timme

Collective response dynamics of a strongly coupled system departs from the continuum phase upon transition to the quasicrystalline phase, or formation of a Wigner lattice. The wave nonlinearity leading to the modulational instability in…

等离子体物理 · 物理学 2023-01-25 Sandip Dalui , Prince Kumar , Devendra Sharma

We describe a phase transition that gives rise to structurally non-trivial states in a two-dimensional ordered network of particles connected by harmonic bonds. Monte Carlo simulations reveal that the network supports, apart from the…

软凝聚态物质 · 物理学 2017-04-05 Saswati Ganguly , Jürgen Horbach , Peter Sollich , Parswa Nath , Smarajit Karmakar , Surajit Sengupta

We consider a heteroclinic network in the framework of winnerless competition of species. It consists of two levels of heteroclinic cycles. On the lower level, the heteroclinic cycle connects three saddles, each representing the survival of…

适应与自组织系统 · 物理学 2018-12-26 Maximilian Voit , Hildegard Meyer-Ortmanns

We propose a new procedure to monitor and forecast the onset of transitions in high dimensional complex systems. We describe our procedure by an application to the Tangled Nature model of evolutionary ecology. The quasi-stable…

适应与自组织系统 · 物理学 2014-12-31 Andrea Cairoli , Duccio Piovani , Henrik Jeldtoft Jensen

Heteroclinic cycles and networks are structures in dynamical systems composed of invariant sets and connecting heteroclinic orbits, and can be robust in systems with invariant subspaces. The usual method for analysing the stability of…

动力系统 · 数学 2026-04-02 David C. Groothuizen Dijkema , Vivien Kirk , Claire M. Postlethwaite

A switching dynamical system by means of piecewise linear systems in R^3 that presents multistability is presented. The flow of the system displays multiple scroll attractors due to the unstable hyperbolic focus-saddle equilibria with…

混沌动力学 · 物理学 2018-09-17 L. J. Ontanon-Garcia , E. Campos-Canton