相关论文: The minimum value of the Colless index
In recent years, there has been an effort to extend the classical notion of phylogenetic balance, originally defined in the context of trees, to networks. One of the most natural ways to do this is with the so-called $B_2$ index. In this…
A multi-labeled tree, or MUL-tree, is a phylogenetic tree where two or more leaves share a label, e.g., a species name. A MUL-tree can imply multiple conflicting phylogenetic relationships for the same set of taxa, but can also contain…
Although the analysis of rooted tree shape has wide-ranging applications, notions of tree balance have developed independently in different domains. In computer science, a balanced tree is one that enables efficient updating and retrieval…
The {\em atom-bond connectivity (ABC) index} is one of the recently most investigated degree-based molecular structure descriptors, that have applications in chemistry. For a graph $G$, the ABC index is defined as $\sum_{uv\in…
Recent years have witnessed a surge of biological interest in the minimum spanning tree (MST) problem for its relevance to automatic model construction using the distances between data points. Despite the increasing use of MST algorithms…
The Sackin index is an important measure for the balance of phylogenetic trees. We investigate two extensions of the Sackin index to the class of galled trees and two of its subclasses (simplex galled trees and normal galled trees) where we…
In a rooted tree, we call a vertex {\em balanced} if it is at equal distance from all its descendant leaves. We count balanced vertices in three different tree varieties. For decreasing binary trees, we can prove that the probability that a…
In the study of extensions of polytopes of combinatorial optimization problems, a notorious open question is that for the size of the smallest extended formulation of the Minimum Spanning Tree problem on a complete graph with $n$ nodes. The…
For $\Lambda$-$n$-coalescents with mutation, we analyse the size $O_n$ of the partition block of $i\in\{1,\ldots,n\}$ at the time where the first mutation appears on the tree that affects $i$ and is shared with any other…
We solve a conjecture by Becker et al. (arXiv:2404.05963) on the topic of zero forcing regarding the number of minimal forts of a tree. They conjectured and we prove $\mathcal{F}_{T_n} \le \binom{n}{2} \mathcal{F}_{P_n}$ where…
Consider~\(n\) nodes~\(\{X_i\}_{1 \leq i \leq n}\) independently distributed in the unit square~\(S,\) each according to a distribution~\(f\) and let~\(K_n\) be the complete graph formed by joining each pair of nodes by a straight line…
A labeling scheme for nearest common ancestors assigns a distinct binary string, called the label, to every node of a tree, so that given the labels of two nodes (and no further information about the topology of the tree) we can compute the…
Consider, for any integer $n\ge3$, the set $\text{Pos}_n$ of all $n$-periodic tree patterns with positive topological entropy and the set $\text{Irr}_n\subset\text{Pos}_n$ of all $n$-periodic irreducible tree patterns. The aim of this paper…
Measures of phylogenetic balance, such as the Colless and Sackin indices, play an important role in phylogenetics. Unfortunately, these indices are specifically designed for phylogenetic trees, and do not extend naturally to phylogenetic…
In this paper we compute the sharp lower bounds for the crossing number of $n$-string $k$-loop essential tangles. For essential tangles with only string components, we characterise the ones with the minimum crossing number for a given…
We give a short proof of the fact that the number of labelled trees on $n$ vertices is $n^{n-2}$. Although many short proofs are known, we have not seen this one before.
Let $T$ be a weighted tree. The weight of a subtree $T_1$ of $T$ is defined as the product of weights of vertices and edges of $T_1$. We obtain a linear-time algorithm to count the sum of weights of subtrees of $T$. As applications, we…
We give a characterization of the percolation threshold for a multirange model on oriented trees, as the first positive root of a polynomial, with the use of a multi-type Galton-Watson process. This gives in particular the exact value of…
A tanglegram $\cal T$ consists of two rooted binary trees with the same number of leaves, and a perfect matching between the two leaf sets. In a layout, the tanglegrams is drawn with the leaves on two parallel lines, the trees on either…
Given a set of points, we define a minimum Steiner point tree to be a tree interconnecting these points and possibly some additional points such that the length of every edge is at most 1 and the number of additional points is minimized. We…