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Experiments measuring currents through single protein channels show unstable currents. Channels switch between 'open' or 'closed' states in a spontaneous stochastic process called gating. Currents are either (nearly) zero or at a definite…

偏微分方程分析 · 数学 2015-06-11 Tai-Chia Lin , Bob Eisenberg

Ion transport, the movement of ions across a cellular membrane, plays a crucial role in a wide variety of biological processes and can be described by the Poisson-Nernst-Planck equations with steric effects (PNP-steric equations). In this…

偏微分方程分析 · 数学 2019-07-16 Li-Chang Hung , Mach Nguyet Minh

In this work, we numerically study linear stability of multiple steady-state solutions to a type of steric Poisson--Nernst--Planck (PNP) equations with Dirichlet boundary conditions, which are applicable to ion channels. With numerically…

计算物理 · 物理学 2020-12-02 Jie Ding , Hui Sun , Shenggao Zhou

In situations involving large potentials or surface charges, the Poisson Boltzman(PB) equation has shortcomings because it neglects ion-ion interactions and steric effects. This has been widely recognized by the electrochemistry community,…

化学物理 · 物理学 2007-05-23 Mustafa Sabri Kilic , Martin Z. Bazant , Armand Ajdari

Experiments measuring currents through single protein channels show unstable currents, a phenomena called the gating of a single channel. Channels switch between an 'open' state with a well defined single amplitude of current and 'closed'…

生物大分子 · 定量生物学 2018-05-18 Nir Gavish , Chun Liu , Bob Eisenberg

The steady-state Poisson-Nernst-Planck (ssPNP) equations are an effective model for the description of ionic transport in ion channels. It is observed that an ion channel exhibits voltage-dependent switching between open and closed states.…

数值分析 · 数学 2017-11-17 Jie Ding , Hui Sun , Zhongming Wang , Shenggao Zhou

We consider numerical methods for the Poisson-Nernst-Planck-Cahn-Hilliard (PNPCH) equations with steric interactions. We propose a novel energy stable numerical scheme that respects mass conservation and positivity at the discrete level.…

数值分析 · 数学 2021-02-03 Yiran Qian , Cheng Wang , Shenggao Zhou

When ions are crowded, the effect of steric repulsion between ions becomes significant and the conventional Poisson--Boltzmann (PB) equation (without steric effect) should be modified. For this purpose, we study the asymptotic limit of…

偏微分方程分析 · 数学 2022-05-26 Jhih-Hong Lyu , Tai-Chia Lin

The non-equilibrium steady states of a semi-infinite quasi-one-dimensional univalent binary electrolyte solution, characterised by non-vanishing electric currents, are investigated by means of Poisson-Nernst-Planck (PNP) theory. Exact…

软凝聚态物质 · 物理学 2024-01-09 Markus Bier

A transient Poisson-Nernst-Planck system with steric effects is analyzed in a bounded domain with no-flux boundary conditions for the ion concentrations and mixed Dirichlet-Neumann boundary conditions for the electric potential. The steric…

偏微分方程分析 · 数学 2024-11-27 Peter Hirvonen , Ansgar Jüngel

The Poisson-Nernst-Planck (PNP) system is a widely accepted model for simulation of ionic channels. In this paper, we design, analyze, and numerically validate a second order unconditional positivity-preserving scheme for solving a reduced…

数值分析 · 数学 2019-10-01 Hailiang Liu , Wumaier Maimaitiyiming

In this paper, to study ionic steric effects, we present a linear, decoupled, second-order accurate in time and structure-preserving scheme with finite element approximations for Carreau fluid equations coupled with steric…

数值分析 · 数学 2025-09-03 Wenxing Zhu , Mingyang Pan , Dongdong He

The Poisson-Nernst-Planck equations with generalized Frumkin-Butler-Volmer boundary conditions (PNP-FBV) describe ion transport with Faradaic reactions and have applications in a wide variety of fields. Using an adaptive time-stepper based…

数值分析 · 数学 2020-06-24 M. C. Pugh , D. Yan , F. P. Dawson

We consider the Nernst-Planck-Navier-Stokes system in a bounded domain of ${\mathbb {R}}^d$, $d=2,3$ with general nonequilibrium Dirichlet boundary conditions for the ionic concentrations. We prove the existence of smooth steady state…

偏微分方程分析 · 数学 2022-10-19 Peter Constantin , Mihaela Ignatova , Fizay-Noah Lee

Effective Poisson-Nernst-Planck (PNP) equations are derived for macroscopic ion transport in charged porous media under periodic fluid flow by an asymptotic multi-scale expansion with drift. The microscopic setting is a two-component…

数学物理 · 物理学 2014-07-16 Markus Schmuck , Martin Z. Bazant

Recently, energetic variational approach was employed to derive models for non-isothermal electrokinetics by Liu et. al \cite{Liu-Wu-Liu-CMS2018}. In particular, the Poisson-Nernst-Planck-Fourier (PNPF) system for the dynamics of $N$-ionic…

偏微分方程分析 · 数学 2021-07-05 Ning Jiang , Yi-Long Luo , Xu Zhang

We present and analyze two stabilized finite element methods for solving numerically the Poisson--Nernst--Planck equations. The stabilization we consider is carried out by using a shock detector and a discrete graph Laplacian operator for…

数值分析 · 数学 2024-12-24 Jesús Bonilla , Juan Vicente Gutiérrez-Santacreu

In this research, we explore how permanent charges affect the movement of ionic currents through ion channels. We use a quasi-one-dimensional classical Poisson-Nernst-Planck (PNP) model to study two types of ions, one positively charged and…

动力系统 · 数学 2023-12-29 Hamid Mofidi

The Poisson-Nernst-Planck-Bikermann (PNPB) model, in which the ions and water molecules are treated as different species with non-uniform sizes and valences with interstitial voids, can describe the steric and correlation effects in ionic…

数学物理 · 物理学 2022-01-06 Jian-Guo Liu , Yijia Tang , Yu Zhao

In this work, focusing on a critical case for shear flows of nematic liquid crystals, we investigate multiplicity and stability of stationary solutions via the parabolic Ericksen-Leslie system. We establish a one-to-one correspondence…

动力系统 · 数学 2026-04-23 Weishi Liu , Majed Sofiani
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