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Human immunodeficiency virus (HIV) evolves with extraordinary rapidity. However, its evolution is constrained by interactions between mutations in its fitness landscape. Here we show that an Ising model describing these interactions,…

种群与进化 · 定量生物学 2016-02-24 Thomas C. Butler , John P. Barton , Mehran Kardar , Arup K. Chakraborty

A central challenge in Human Immunodeficiency Virus (HIV) public health policy lies in determining whether to universally expand treatment access, despite the risk of sub-optimal adherence and consequent drug resistance, or to adopt a more…

定量方法 · 定量生物学 2025-07-16 Ashish Poonia , Siddhartha P. Chakrabarty

The origin of the unusual incubation period distribution in the development of AIDS is largely unresolved. A key factor in understanding the observed distribution of latency periods, as well as the occurrence of infected individuals not…

统计力学 · 物理学 2016-08-31 Christel Kamp , Stefan Bornholdt

AIDS is the pandemic of our era. A disease that scares us not only because it is fatal but also because its insidious time course makes us all potential carriers long before it hands us our heads in a basket. The strange three stage…

适应与自组织系统 · 物理学 2009-10-31 Uri Hershberg , Yoram Louzoun , Henri Atlan , Sorin Solomon

One of the cornerstones in combating the HIV pandemic is being able to assess the current state and evolution of local HIV epidemics. This remains a complex problem, as many HIV infected individuals remain unaware of their infection status,…

种群与进化 · 定量生物学 2019-10-24 Pieter Libin , Nassim Versbraegen , Ana B. Abecasis , Perpetua Gomes , Tom Lenaerts , Ann Nowé

Objective: The reservoir of human immunodeficiency virus (HIV) latently infected cells is the major obstacle for eradication of acquired immunodeficiency syndrome (AIDS). Due to the noisy environment and multiple influencing factors in the…

生物物理 · 物理学 2024-11-06 Ruiqi Xiong , Yang Su , Ping Ao

The current (2007-2007) structure and content of dental materials research has been investigated by identifying and describing the emergent research fronts which can be related to basic, translational and clinical observation research. By a…

An individual detected as HIV positive in Cuba is asked to provide a list of his/her sexual contacts for the previous 2 years. This allows one to gather detailed information on the spread of the HIV epidemic. Here we study the evolution of…

社会与信息网络 · 计算机科学 2011-09-13 Charanpal Dhanjal , Stephan Clemencon , Hector De Arazoza , Fabrice Rossi , Viet Chi Tran

The science of networks has revolutionised research into the dynamics of interacting elements. It could be argued that epidemiology in particular has embraced the potential of network theory more than any other discipline. Here we review…

This study examines the historical evolution of interdisciplinary research (IDR) over a 40-year period, focusing on its dynamic trends, phases, and key turning points. We apply time series analysis to identify critical years for…

应用统计 · 统计学 2025-03-28 Guoyang Rong , Ying Chen , Feicheng Ma , Thorsten Koch

In this work we introduce a differential equation model with time-delay that describes the three-stage dynamics and the two time scales observed in HIV infection. Assuming that the virus has high mutation and rapid reproduction rates that…

生物物理 · 物理学 2015-03-13 Flora S. Bacelar , Roberto F. S. Andrade , Rita M. Zorzenon dos Santos

Interdisciplinary research fuels innovation. In this paper, we examine the interdisciplinarity of research output driven by funding. Considering 36 major infectious diseases, we model interdisciplinarity through temporal correlation…

社会与信息网络 · 计算机科学 2024-12-17 Anbang Du , Michael Head , Markus Brede

Understanding historical trends in the epidemic of HIV is important for assessing current and projecting future trends in prevalence, incidence and mortality and for evaluating the impact and cost-effectiveness of control measures. In…

定量方法 · 定量生物学 2014-12-10 Brian G. Williams

Mathematical modeling of biological systems is crucial to effectively and efficiently developing treatments for medical conditions that plague humanity. Often, systems of ordinary differential equations are a traditional tool used to…

经典分析与常微分方程 · 数学 2015-09-01 Eric Jones , Peter Roemer , Mrinal Raghupathi , Stephen Pankavich

Drawing on a large database of publicly announced R&D alliances, we empirically investigate the evolution of R&D networks and the process of alliance formation in several manufacturing sectors over a 24-year period (1986-2009). Our goal is…

物理与社会 · 物理学 2017-08-08 Mario Vincenzo Tomasello , Mauro Napoletano , Antonios Garas , Frank Schweitzer

We analyze 14,651 HIV1 reverse transcriptase (HIV RT) sequences from the Stanford HIV Drug Resistance Database labeled with treatment regimen in order to study the evolution this enzyme under drug selection in the clinic. Our goal is to…

基因组学 · 定量生物学 2022-10-04 Shefali Qamar , Manel Camps , Jay Kim

This paper describes a novel approach to modeling homphily, i.e. the tendency of nodes that share (or differ in) certain attributes to be linked; we consider dynamic networks in which nodes can be added over time but not removed. Our…

基因组学 · 定量生物学 2022-01-13 V. DeGruttola , M. Nakazawa , J. Liu , X. Tu , S. Little , S. Mehta

The evolutionary dynamics of HIV during the chronic phase of infection is driven by the host immune response and by selective pressures exerted through drug treatment. To understand and model the evolution of HIV quantitatively, the…

种群与进化 · 定量生物学 2012-08-01 Richard A. Neher , Thomas Leitner

Human immunodeficiency virus (HIV-1 or simply HIV) induces a persistent infection, which in the absence of treatment leads to AIDS and death in almost all infected individuals. HIV infection elicits a vigorous immune response starting about…

种群与进化 · 定量生物学 2015-06-05 Vitaly V. Ganusov , Richard A. Neher , Alan S. Perelson

We use a cellular automata model to study the evolution of HIV infection and the onset of AIDS. The model takes into account the global features of the immune response to any pathogen, the fast mutation rate of the HIV and a fair amount of…

统计力学 · 物理学 2009-10-31 Rita Maria Zorzenon dos Santos , Sergio Coutinho
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