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Research showed that, the information transmitted in biological neurons is encoded in the instants of successive action potentials or their firing rate. In addition to that, in-vivo operation of the neuron makes measurement difficult and…

神经元与认知 · 定量生物学 2018-01-10 Ozgur Doruk , Kechen Zhang

Finding an optimal parameter of a black-box function is important for searching stable material structures and finding optimal neural network structures, and Bayesian optimization algorithms are widely used for the purpose. However, most of…

机器学习 · 计算机科学 2019-02-27 Tatsuya Shiraishi , Tam Le , Hisashi Kashima , Makoto Yamada

Topological methods for data analysis present opportunities for enforcing certain invariances of broad interest in computer vision, including view-point in activity analysis, articulation in shape analysis, and measurement invariance in…

计算机视觉与模式识别 · 计算机科学 2018-07-30 Anirudh Som , Kowshik Thopalli , Karthikeyan Natesan Ramamurthy , Vinay Venkataraman , Ankita Shukla , Pavan Turaga

We introduce a method for training neural networks to perform image or volume segmentation in which prior knowledge about the topology of the segmented object can be explicitly provided and then incorporated into the training process. By…

计算机视觉与模式识别 · 计算机科学 2020-09-21 James R. Clough , Nicholas Byrne , Ilkay Oksuz , Veronika A. Zimmer , Julia A. Schnabel , Andrew P. King

We use methods from topological data analysis to study the topological features of certain distributions of string vacua. Topological data analysis is a multi-scale approach used to analyze the topological features of a dataset by…

高能物理 - 理论 · 物理学 2016-04-20 Michele Cirafici

Persistent homology provides information about the lifetime of homology classes along a filtration of cell complexes. Persistence barcode is a graphical representation of such information. A filtration might be determined by time in a set…

计算机视觉与模式识别 · 计算机科学 2018-01-04 Rocio Gonzalez-Diaz , Maria-Jose Jimenez , Belen Medrano

Data quality is crucial for the successful training, generalization and performance of machine learning models. We propose to measure the quality of a subset concerning the dataset it represents, using topological data analysis techniques.…

代数拓扑 · 数学 2024-10-01 Álvaro Torras-Casas , Eduardo Paluzo-Hidalgo , Rocio Gonzalez-Diaz

Neural spike trains, which are sequences of very brief jumps in voltage across the cell membrane, were one of the motivating applications for the development of point process methodology. Early work required the assumption of stationarity,…

应用统计 · 统计学 2011-08-01 Robert E. Kass , Ryan C. Kelly , Wei-Liem Loh

We consider the task of topology discovery of sparse random graphs using end-to-end random measurements (e.g., delay) between a subset of nodes, referred to as the participants. The rest of the nodes are hidden, and do not provide any…

社会与信息网络 · 计算机科学 2012-03-06 Animashree Anandkumar , Avinatan Hassidim , Jonathan Kelner

The study is devoted to definition of generalized metrical and topological (informational entropy) characteristics of neural signals via their well-known theoretical models. We have shown that time dependence of action potential of neurons…

神经元与认知 · 定量生物学 2016-10-06 Z. Zh. Zhanabaev , T. Yu. Grevtseva , Y. T. Kozhagulov

While many approaches to make neural networks more fathomable have been proposed, they are restricted to interrogating the network with input data. Measures for characterizing and monitoring structural properties, however, have not been…

This paper introduces persistent homology, which is a powerful tool to characterize the shape of data using the mathematical concept of topology. We explain the fundamental idea of persistent homology from scratch using some examples. We…

代数拓扑 · 数学 2022-05-25 Ippei Obayashi , Takenobu Nakamura , Yasuaki Hiraoka

Information networks are becoming increasingly popular to capture complex relationships across various disciplines, such as social networks, citation networks, and biological networks. The primary challenge in this domain is measuring…

代数拓扑 · 数学 2019-07-23 Mehmet Emin Aktas , Esra Akbas , Ahmed El Fatmaoui

Recent studies have actively employed persistent homology (PH), a topological data analysis technique, to analyze the topological information in time series data. Many successful studies have utilized graph representations of time series…

代数拓扑 · 数学 2025-12-15 Eunwoo Heo , Jae-Hun Jung

A fundamental tool in topological data analysis is persistent homology, which allows extraction of information from complex datasets in a robust way. Persistent homology assigns a module over a principal ideal domain to a one-parameter…

代数拓扑 · 数学 2019-06-19 Heather A. Harrington , Nina Otter , Hal Schenck , Ulrike Tillmann

Topological features based on persistent homology capture high-order structural information so as to augment graph neural network methods. However, computing extended persistent homology summaries remains slow for large and dense graphs and…

机器学习 · 计算机科学 2022-11-16 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen

Neurons subject to a common non-stationary input may exhibit a correlated firing behavior. Correlations in the statistics of neural spike trains also arise as the effect of interaction between neurons. Here we show that these two situations…

定量方法 · 定量生物学 2021-04-13 Joanna Tyrcha , Yasser Roudi , Matteo Marsili , John Hertz

Persistent homology is a method for computing the topological features present in a given data. Recently, there has been much interest in the integration of persistent homology as a computational step in neural networks or deep learning. In…

机器学习 · 计算机科学 2020-11-17 Padraig Corcoran , Bailin Deng

We study a class models of correlated random networks in which vertices are characterized by \textit{hidden variables} controlling the establishment of edges between pairs of vertices. We find analytical expressions for the main topological…

无序系统与神经网络 · 物理学 2009-11-10 Marian Boguna , Romualdo Pastor-Satorras

Network-topology inference from (vertex) signal observations is a prominent problem across data-science and engineering disciplines. Most existing schemes assume that observations from all nodes are available, but in many practical…

统计方法学 · 统计学 2021-11-11 Andrei Buciulea , Samuel Rey , Antonio G. Marques