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The Tile Assembly Model is a Turing universal model that Winfree introduced in order to study the nanoscale self-assembly of complex (typically aperiodic) DNA crystals. Winfree exhibited a self-assembly that tiles the first quadrant of the…

计算复杂性 · 计算机科学 2015-05-18 Jack H. Lutz , Brad Shutters

In this paper, we present high-level overviews of tile-based self-assembling systems capable of producing complex, infinite, aperiodic structures known as discrete self-similar fractals. Fractals have a variety of interesting mathematical…

新兴技术 · 计算机科学 2016-12-26 Jacob Hendricks , Meagan Olsen , Matthew J. Patitz , Trent A. Rogers , Hadley Thomas

It is well known that the discrete Sierpinski triangle can be defined as the nonzero residues modulo 2 of Pascal's triangle, and that from this definition one can easily construct a tileset with which the discrete Sierpinski triangle…

其他计算机科学 · 计算机科学 2009-01-22 Steven M. Kautz , James I. Lathrop

Winfree (1998) showed that discrete Sierpinski triangles can self-assemble in the Tile Assembly Model. A striking molecular realization of this self-assembly, using DNA tiles a few nanometers long and verifying the results by atomic-force…

离散数学 · 计算机科学 2009-03-11 James I. Lathrop , Jack H. Lutz , Scott M. Summers

In this paper we consider the problem of the strict self-assembly of infinite fractals within tile self-assembly. In particular, we provide tile assembly algorithms for the assembly of the discrete Sierpinski triangle and the discrete…

We consider the self-assembly of fractals in one of the most well-studied models of tile based self-assembling systems known as the Two-handed Tile Assembly Model (2HAM). In particular, we focus our attention on a class of fractals called…

新兴技术 · 计算机科学 2018-10-12 Jacob Hendricks , Joseph Opseth

This paper gives a (polynomial time) algorithm to decide whether a given Discrete Self-Similar Fractal Shape can be assembled in the aTAM model.In the positive case, the construction relies on a Self-Assembling System in the aTAM which…

离散数学 · 计算机科学 2024-06-04 Florent Becker

This paper answers a long-standing open question in tile-assembly theory, namely that it is possible to strictly assemble discrete self-similar fractals (DSSFs) in the abstract Tile-Assembly Model (aTAM). We prove this in 2 separate ways,…

计算几何 · 计算机科学 2024-10-11 Florent Becker , Daniel Hader , Matthew J. Patitz

In this paper, we work in a 2D version of the probabilistic variant of Winfree's abstract Tile Assembly Model defined by Chandran, Gopalkrishnan and Reif (SICOMP 2012) in which attaching tiles are sampled uniformly with replacement. First,…

数据结构与算法 · 计算机科学 2024-08-13 David Furcy , Scott M. Summers

We review some recent results related to the self-assembly of infinite structures in the Tile Assembly Model. These results include impossibility results, as well as novel tile assembly systems in which shapes and patterns that represent…

计算复杂性 · 计算机科学 2009-06-19 Matthew J. Patitz , Scott M. Summers

We discuss the self-assembly system of triangular tiles instead of square tiles, in particular right triangular tiles and equilateral triangular tiles. We show that the triangular tile assembly system, either deterministic or…

离散数学 · 计算机科学 2010-03-01 Lila Kari , Shinnosuke Seki , Zhi Xu

We show that the Tile Assembly Model exhibits a strong notion of universality where the goal is to give a single tile assembly system that simulates the behavior of any other tile assembly system. We give a tile assembly system that is…

计算复杂性 · 计算机科学 2016-09-08 David Doty , Jack H. Lutz , Matthew J. Patitz , Scott M. Summers , Damien Woods

Fractal structures emerge from statistical and hierarchical processes in urban development or network evolution. In a class of efficient and robust geographical networks, we derive the size distribution of layered areas, and estimate the…

物理与社会 · 物理学 2015-05-20 Yukio Hayashi

We investigate the role of nondeterminism in Winfree's abstract Tile Assembly Model (aTAM), which was conceived to model artificial molecular self-assembling systems constructed from DNA. Of particular practical importance is to find tile…

计算复杂性 · 计算机科学 2010-11-29 Nathaniel Bryans , Ehsan Chiniforooshan , David Doty , Lila Kari , Shinnosuke Seki

This short survey of recent work in tile self-assembly discusses the use of simulation to classify and separate the computational and expressive power of self-assembly models. The journey begins with the result that there is a single…

计算几何 · 计算机科学 2013-09-06 Damien Woods

In this paper, we prove that in the abstract Tile Assembly Model (aTAM), an accretion-based model which only allows for a single tile to attach to a growing assembly at each step, there are no tile assembly systems capable of…

新兴技术 · 计算机科学 2018-07-18 Jacob Hendricks , Joseph Opseth , Matthew Patitz , Scott Summers

Working in Winfree's abstract tile assembly model, we show that a constant-size tile assembly system can be programmed through relative tile concentrations to build an n x n square with high probability, for any sufficiently large n. This…

计算复杂性 · 计算机科学 2015-03-13 David Doty

In this paper, we search for {\it absolute} limitations of the Tile Assembly Model (TAM), along with techniques to work around such limitations. Specifically, we investigate the self-assembly of fractal shapes in the TAM. We prove that no…

计算复杂性 · 计算机科学 2008-04-26 Matthew J. Patitz , Scott M. Summers

Perhaps the two most significant theoretical questions about the programming of self-assembling agents are: (1) necessary and sufficient conditions to produce a unique terminal assembly, and (2) error correction. We address both questions,…

数据结构与算法 · 计算机科学 2009-09-16 Aaron Sterling

The connection between self-assembly and computation suggests that a shape can be considered the output of a self-assembly ``program,'' a set of tiles that fit together to create a shape. It seems plausible that the size of the smallest…

计算复杂性 · 计算机科学 2008-06-22 David Soloveichik , Erik Winfree
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