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We introduce a random bit-string model of post-transcriptional genetic regulation based on sequence matching. The model spontaneously yields a scale free network with power law scaling with $ \gamma=-1$ and also exhibits log-periodic…

基因组学 · 定量生物学 2009-11-10 Duygu Balcan , Ayse Erzan

Controllability of complex networks arises in many technological problems involving social, financial, road, communication, and smart grid networks. In many practical situations, the underlying topology might change randomly with time, due…

系统与控制 · 计算机科学 2020-01-08 Fernando Gama , Elvin Isufi , Alejandro Ribeiro , Geert Leus

A majority of studied models for scale-free networks have degree distributions with exponents greater than $2$. Real networks, however, can demonstrate essentially more heavy-tailed degree distributions. We explore two models of scale-free…

物理与社会 · 物理学 2016-12-14 Gábor Timár , Sergey N. Dorogovtsev , José Fernando F. Mendes

Degree distribution, or equivalently called degree sequence, has been commonly used to be one of most significant measures for studying a large number of complex networks with which some well-known results have been obtained. By contrast,…

物理与社会 · 物理学 2020-02-19 Fei Ma , Xiaoming Wang , Ping Wang

Very often, when studying topological or dynamical properties of random scale-free networks, it is tacitly assumed that degree-degree correlations are not present. However, simple constraints, such as the absence of multiple edges and…

物理与社会 · 物理学 2016-03-23 J. B. de Brito , C. I. N. Sampaio Filho , A. A. Moreira , J. S. Andrade

We show that the collapsed globular phase of a polymer accommodates a scale-free incompatibility graph of its contacts. The degree distribution of this network is found to decay with the exponent $\gamma = 1/(2-c)$ up to a cut-off degree…

统计力学 · 物理学 2009-11-10 A. Kabakcioglu , A. L. Stella

We study the XY-rotors model on small networks whose number of links scales with the system size $N_{links}\sim N^{\gamma}$, where $1\le\gamma\le2$. We first focus on regular one dimensional rings in the microcanonical ensemble. For…

统计力学 · 物理学 2013-09-03 Sarah De Nigris , Xavier Leoncini

In this paper, we prove that Bernoulli percolation on bounded degree graphs with isoperimetric dimension $d>4$ undergoes a non-trivial phase transition (in the sense that $p_c<1$). As a corollary, we obtain that the critical point of…

Scale-free networks are abundant in nature and society, describing such diverse systems as the world wide web, the web of human sexual contacts, or the chemical network of a cell. All models used to generate a scale-free topology are…

统计力学 · 物理学 2009-11-07 Albert-Laszlo Barabasi , Erzsebet Ravasz , Tamas Vicsek

We find that scale-free random networks are excellently modeled by a deterministic graph. This graph has a discrete degree distribution (degree is the number of connections of a vertex) which is characterized by a power-law with exponent…

统计力学 · 物理学 2009-11-07 S. N. Dorogovtsev , A. V. Goltsev , J. F. F. Mendes

Boolean networks have been the object of much attention, especially since S. Kauffman proposed them in the 1960's as models for gene regulatory networks. These systems are characterized by being defined on a Boolean state space and by…

分子网络 · 定量生物学 2007-11-21 German A. Enciso , Winfried Just

We consider a model of large regulatory gene expression networks where the thresholds activating the sigmoidal interactions between genes and the signs of these interactions are shuffled randomly. Such an approach allows for a qualitative…

分子网络 · 定量生物学 2007-05-23 D. Volchenkov , R. Lima

In this paper, we show our discovery that state-transition networks in several chaotic dynamical systems are "scale-free networks," with a technique to understand a dynamical system as a whole, which we call the analysis for…

混沌动力学 · 物理学 2010-07-26 Takashi Iba

The percolation phase transition in complex network systems attracts much attention and has numerous applications in various research fields. Finite size effects smooth the transition and make it difficult to predict the critical point of…

无序系统与神经网络 · 物理学 2026-02-11 A. V. Goltsev , S. N. Dorogovtsev

Extensive studies have been done to understand the principles behind architectures of real networks. Recently, evidences for hierarchical organization in many real networks have also been reported. Here, we present a new hierarchical model…

其他凝聚态物理 · 物理学 2007-05-23 J. C. Nacher , N. Ueda , M. Kanehisa , T. Akutsu

Boolean networks, widely used to model gene regulation, exhibit a phase transition between regimes in which small perturbations either die out or grow exponentially. We show and numerically verify that this phase transition in the dynamics…

统计力学 · 物理学 2013-05-30 Shane Squires , Edward Ott , Michelle Girvan

In a network cliques are fully connected subgraphs that reveal which are the tight communities present in it. Cliques of size c>3 are present in random Erdos and Renyi graphs only in the limit of diverging average connectivity. Starting…

无序系统与神经网络 · 物理学 2009-11-11 Ginestra Bianconi , Matteo Marsili

It is suggested that the degree distribution for networks of the cell-metabolism for simple organisms reflects an ubiquitous randomness. This implies that natural selection has exerted no or very little pressure on the network degree…

生物物理 · 物理学 2008-03-05 Petter Minnhagen , Sebastian Bernhardsson

We study the giant component problem slightly above the critical regime for percolation on Poissonian random graphs in the scale-free regime, where the vertex weights and degrees have a diverging second moment. Critical percolation on…

概率论 · 数学 2021-07-12 Souvik Dhara , Remco van der Hofstad

We investigate the higher-order connectivity of scale-free networks using algebraic topology. We model scale-free networks as preferential attachment graphs, and we study the algebraic-topological properties of their clique complexes. We…

代数拓扑 · 数学 2025-02-25 Chunyin Siu