相关论文: A Phase Transition and Stochastic Domination in Pi…
We consider a model for heterogeneous 'gene regulatory networks' that is a generalization of the model proposed by Chatterjee and Durrett (2011) as an "annealed approximation" of Kauffmann's (1969) random Boolean networks. In this model,…
A random boolean cellular automaton is a network of boolean gates where the inputs, the boolean function, and the initial state of each gate are chosen randomly. In this article, each gate has two inputs. Let $a$ (respectively $c$) be the…
We consider random graphs with uniformly bounded edges on a Poisson point process conditioned to contain the origin. In particular we focus on the random connection model, the Boolean model and Miller-Abrahams random resistor network with…
In this work we consider random Boolean networks that provide a general model for genetic regulatory networks. We extend the analysis of James Lynch who was able to proof Kauffman's conjecture that in the ordered phase of random networks,…
We investigate analytically and numerically the critical line in undirected random Boolean networks with arbitrary degree distributions, including scale-free topology of connections $P(k)\sim k^{-\gamma}$. We show that in infinite…
Multiple dynamic pathways always exist in biological networks, but their robustness against internal fluctuations and relative stability have not been well recognized and carefully analyzed yet. Here we try to address these issues through…
In this paper we study the phase transitions of different types of Random Boolean networks. These differ in their updating scheme: synchronous, semi-synchronous, or asynchronous, and deterministic or non-deterministic. It has been shown…
A probabilistic Boolean network (PBN) is a discrete-time system composed of a collection of Boolean networks between which the PBN switches in a stochastic manner. This paper focuses on the study of quotients of PBNs. Given a PBN and an…
Given a quasi-transitive infinite graph $G$ with volume growth rate ${\rm gr}(G),$ a transient biased electric network $(G,\, c_1)$ with bias $\lambda_1\in (0,\,{\rm gr}(G))$ and a recurrent biased one $(G,\, c_2)$ with bias $\lambda_2\in…
We study an open-chain totally asymmetric exclusion process (TASEP) with stochastic gates present at the two boundaries. The gating dynamics has been modeled keeping the physical system of ion-channel gating in mind. These gates can…
We study the frog model with death on the biregular tree $\mathbb{T}_{d_1,d_2}$. Initially, there is a random number of awake and sleeping particles located on the vertices of the tree. Each awake particle moves as a discrete-time…
In random access protocols, the service rate depends on the number of stations with a packet buffered for transmission. We demonstrate via numerical analysis that this state-dependent rate along with the consideration of Poisson traffic and…
Emergence of dominating cliques in Erd\"os-R\'enyi random graph model ${\bbbg(n,p)}$ is investigated in this paper. It is shown this phenomenon possesses a phase transition. Namely, we have argued that, given a constant probability $p$, an…
High-dimensional planted problems, such as finding a hidden dense subgraph within a random graph, often exhibit a gap between statistical and computational feasibility. While recovering the hidden structure may be statistically possible, it…
We study diffusion with a bias towards a target node in networks. This problem is relevant to efficient routing strategies in emerging communication networks like optical networks. Bias is represented by a probability $p$ of the…
We consider the limiting behavior of the count of subgraphs isomorphic to a graph $G$ with $m\geq 0$ fixed endpoints (or roots) in the random-connection model, as the intensity $\lambda$ of the underlying Poisson point process tends to…
The exponential family of random graphs is one of the most promising class of network models. Dependence between the random edges is defined through certain finite subgraphs, analogous to the use of potential energy to provide dependence…
In this work, we investigate a simple nonequilibrium system with many interconnected, open subsystems, each exchanging a globally conserved resource with an external reserve. The system is represented by a random graph, where nodes…
Consider the complete graph \(K_n\) on \(n\) vertices where each edge \(e\) is independently open with probability \(p_n(e)\) or closed otherwise. Here \(\frac{C-\alpha_n}{n} \leq p_n(e) \leq \frac{C+\alpha_n}{n}\) where \(C > 0\) is a…
A model of cellular metabolism due to S. Kauffman is analyzed. It consists of a network of Boolean gates randomly assembled according to a probability distribution. It is shown that the behavior of the network depends very critically on…