相关论文: Bounds for DNA codes with constant GC-content

In this work, we study the DNA codes from the ring R = Z4 + wZ4, where w^2 = 2+2w with 16 elements. We establish a one to one correspondence between the elements of the ring R and all the DNA codewords of length 2 by defining a…

We establish a general formula for the maximum size of finite length block codes with minimum pairwise distance no less than $d$. The achievability argument involves an iterative construction of a set of radius-$d$ balls, each centered at a…

We give cell-probe bounds for the computation of edit distance, Hamming distance, convolution and longest common subsequence in a stream. In this model, a fixed string of $n$ symbols is given and one $\delta$-bit symbol arrives at a time in…

In DNA-based data storage, DNA codes with biochemical constraints and error correction are designed to protect data reliability. Single-stranded DNA sequences with secondary structure avoidance (SSA) help to avoid undesirable secondary…

Separating codes have their applications in collusion-secure fingerprinting for generic digital data, while they are also related to the other structures including hash family, intersection code and group testing. In this paper we study…

Frameproof codes are used to fingerprint digital data. It can prevent copyrighted materials from unauthorized use. In this paper, we study upper and lower bounds for $w$-frameproof codes of length $N$ over an alphabet of size $q$. The upper…

Designing short DNA words is a problem of constructing a set (i.e., code) of n DNA strings (i.e., words) with the minimum length such that the Hamming distance between each pair of words is at least k and the n words satisfy a set of…

We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivations including DNA computing and DNA self-assembly. Previous…

After a discussion of the Griesmer and Heller bound for the distance of a convolutional code we present several codes with various parameters, over various fields, and meeting the given distance bounds. Moreover, the Griesmer bound is used…

A basic problem for constant dimension codes is to determine the maximum possible size $A_q(n,d;k)$ of a set of $k$-dimensional subspaces in $\mathbb{F}_q^n$, called codewords, such that the subspace distance satisfies…

The order bound for the minimum distance of algebraic geometry codes was originally defined for the duals of one-point codes and later generalized for arbitrary algebraic geometry codes. Another bound of order type for the minimum distance…

The DNA storage channel is considered, in which a codeword is comprised of $M$ unordered DNA molecules. At reading time, $N$ molecules are sampled with replacement, and then each molecule is sequenced. A coded-index concatenated-coding…

By employing the residue polynomials, a construction of constant-composition codes is given. This construction generalizes the one proposed by Xing[16]. It turns out that when d=3 this construction gives a lower bound of…

Generalized bicycle (GB) codes is a class of quantum error-correcting codes constructed from a pair of binary circulant matrices. Unlike for other simple quantum code ans\"atze, unrestricted GB codes may have linear distance scaling. In…

A covering code is a set of codewords with the property that the union of balls, suitably defined, around these codewords covers an entire space. Generally, the goal is to find the covering code with the minimum size codebook. While most…

Conflict-avoiding codes are used in the multiple-access collision channel without feedback. The number of codewords in a conflict-avoiding code is the number of potential users that can be supported in the system. In this paper, a new upper…

We derive a general lower bound for the generalized Hamming weights of nested matrix-product codes, with a particular emphasis on the cases with two and three constituent codes. We also provide an upper bound which is reminiscent of the…

We present new upper bounds on the parameters of batch codes with restricted query size. These bounds are an improvement on the Singleton bound. The techniques for derivations of these bounds are based on the ideas in the literature for…

Let $C$ be a binary code of length $n$ with distances $0<d_1<\cdots<d_s\le n$. In this note we prove a general upper bound on the size of $C$ without any restriction on the distances $d_i$. The bound is asymptotically optimal.

In this paper, we develop the theory for constructing DNA cyclic codes of odd length over $R=\Z_4[u]/\langle u^2-1 \rangle$ based on the deletion distance. Firstly, we relate DNA pairs with a special 16 elements of ring $R$. Cyclic codes of…