相关论文: Bounds for DNA codes with constant GC-content
An important family of quantum codes is the quantum maximum-distance-separable (MDS) codes. In this paper, we construct some new classes of quantum MDS codes by generalized Reed-Solomon (GRS) codes and Hermitian construction. In addition,…
DNA is an attractive candidate for data storage. Its millennial durability and nanometer scale offer exceptional data density and longevity. Its relevance to medical applications also drives advances in DNA-related biotechnology. To protect…
We study the amount of reliable information that can be stored in a DNA-based storage system with noisy sequencing, where each codeword is composed of short DNA molecules. We analyze a concatenated coding scheme, where the outer code is…
We introduce the concepts of complex Grassmannian codes and designs. Let G(m,n) denote the set of m-dimensional subspaces of C^n: then a code is a finite subset of G(m,n) in which few distances occur, while a design is a finite subset of…
Constant-dimension codes have recently received attention due to their significance to error control in noncoherent random linear network coding. What the maximal cardinality of any constant-dimension code with finite dimension and minimum…
The capacity of line networks with buffer size constraints is an open, but practically important problem. In this paper, the upper bound on the achievable rate of a class of codes, called batched codes, is studied for line networks. Batched…
Most DNA sequencing technologies are based on the shotgun paradigm: many short reads are obtained from random unknown locations in the DNA sequence. A fundamental question, studied in arXiv:1203.6233, is what read length and coverage depth…
DNA Data storage has recently attracted much attention due to its durable preservation and extremely high information density (bits per gram) properties. In this work, we propose a hybrid coding strategy comprising of generalized…
Proving the quantum Hamming bound for degenerate nonbinary stabilizer codes has been an open problem for a decade. In this note, I prove this bound for double error-correcting degenerate stabilizer codes. Also, I compute the maximum length…
In this paper, we study the theory for constructing DNA cyclic codes of odd length over $\Z_4[u]/\langle u^2 \rangle$ which play an important role in DNA computing. Cyclic codes of odd length over $\Z_4 + u \Z_4$ satisfy the reverse…
A class of linear block codes which simultaneously generalizes Gabidulin codes and a class of skew cyclic codes is defined. For these codes, both a Hartmann-Tzeng-like bound and a Roos-like bound, with respect to their rank distance, are…
In this work, we investigate a challenging problem, which has been considered to be an important criterion in designing codewords for DNA computing purposes, namely secondary structure avoidance in single-stranded DNA molecules. In short,…
A pattern $\alpha$ is a string of variables and terminal letters. We say that $\alpha$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $\alpha$ by terminal words. The matching…
Sum-rank Hamming codes are introduced in this work. They are essentially defined as the longest codes (thus of highest information rate) with minimum sum-rank distance at least $ 3 $ (thus one-error-correcting) for a fixed redundancy $ r $,…
We study permutations over the set of $\ell$-grams, that are feasible in the sense that there is a sequence whose $\ell$-gram frequency has the same ranking as the permutation. Codes, which are sets of feasible permutations, protect…
We prove that there are 3-CNF formulas over n variables that can be refuted in resolution in width w but require resolution proofs of size n^Omega(w). This shows that the simple counting argument that any formula refutable in width w must…
Maximum distance separable (MDS) are constructed to required specifications. The codes are explicitly given over finite fields with efficient encoding and decoding algorithms. Series of such codes over finite fields with ratio of distance…
In this letter we consider the ensemble of codes formed by the serial concatenation of a Hamming code and two accumulate codes. We show that this ensemble is asymptotically good, in the sense that most codes in the ensemble have minimum…
We introduce a random coding technique for transmission over discrete memoryless channels, reminiscent of the basic construction attaining the Gilbert-Varshamov bound for codes in Hamming spaces. The code construction is based on drawing…
It is known that maximum distance separable and maximum distance profile convolutional codes exist over large enough finite fields of any characteristic for all parameters $(n,k,\delta)$. It has been conjectured that the same is true for…