相关论文: Modeling truncated hemoglobin vibrational dynamics
We discuss the transport of a tracer particle through the Bose Einstein condensate of a Bose gas. The particle interacts with the atoms in the Bose gas through two-body interactions. In the limiting regime where the particle is very heavy…
Unitary integrable models typically relax to a stationary Generalized Gibbs Ensemble (GGE), but in experimental realizations dissipation often breaks integrability. In this work, we use the recently introduced time-dependent GGE (t-GGE)…
We consider the non-equilibrium dynamics of a gas of impenetrable bosons released from a harmonic trapping potential to a circle. The many body dynamics is solved analytically and the time dependence of all the physically relevant…
The assumption of linear response of protein molecules to thermal noise or structural perturbations, such as ligand binding or detachment, is broadly used in the studies of protein dynamics. Conformational motions in proteins are…
How a closed interacting quantum many-body system relaxes and dephases as a function of time is a fundamental question in thermodynamic and statistical physics. In this work, we analyse and observe the persistent temporal fluctuations after…
We analyze the time evolution of the Bose-Hubbard model after a sudden quantum quench to a weakly interacting regime. Specifically, motivated by a recent experiment at Kyoto University, we numerically simulate redistribution of the kinetic…
To explain the differentiation of stem cells in terms of dynamical systems theory, models of interacting cells with intracellular protein expression dynamics are analyzed and simulated. Simulations were carried out for all possible protein…
We introduce an approach for performing "very long" computer simulations of the dynamics of simplified, folded proteins. Using an alpha-carbon protein model and a fine grid to mimic continuum computations at increased speed, we perform…
A general scheme, which includes constructions of coarse-grained (CG) models, weighted ensemble dynamics (WED) simulations and cluster analyses (CA) of stable states, is presented to detect dynamical and thermodynamical properties in…
In contrast to lattice systems where powerful numerical techniques such as matrix product state based methods are available to study the non-equilibrium dynamics, the non-equilibrium behaviour of continuum systems is much harder to…
In this work, we perform a careful study of an special arrangement of coupled systems that consists of two external harmonic oscillators weakly coupled to an arbitrary network (data bus) of strongly interacting oscillators. Our aim is to…
We study some aspects of equilibrium and off equilibrium quantum dynamics of dilute bosonic gases in the presence of a trapping potential. We consider systems with a fixed number of particles N and study their scaling behavior with…
Ultracold atoms in optical lattices are versatile testbeds to study and manipulate equilibrium and out-of-equilibrium aspects of quantum many-body systems whose behavior can be described by Hubbard-type Hamiltonians. In this paper, we…
The simplest model of DNA mechanics describes the double helix as a continuous rod with twist and bend elasticity. Recent work has discussed the relevance of a little-studied coupling $G$ between twisting and bending, known to arise from…
A model for studying atomtronic devices and circuits based on finite temperature Bose-condensed gases is presented. The approach involves numerically solving equations of motion for atomic populations and coherences, derived using the…
While isolated quantum systems generally thermalize after long-time evolution, there are several exceptions defying thermalization. A notable mechanism of such nonergodicity is the Hilbert space fragmentation (HSF), where the Hamiltonian…
Mathematical results on some models describing the motion of a tracer particle through a Bose-Einstein condensate are described. In the limit of a very dense, very weakly interacting Bose gas and for a very large particle mass, the dynamics…
The overdamped Brownian dynamics of a harmonic oscillator is a paradigmatic system in non-equilibrium statistical mechanics, which reliably models relevant stochastic systems such as colloidal particles submitted to optical confinement. In…
Contraction theory is a recently developed dynamic analysis and nonlinear control system design tool based on an exact differential analysis of convergence. This paper extends contraction theory to local and global stability analysis of…
The Truncated conformal space approach (TCSA) is a numerical technique for finding finite size spectrum of Hamiltonians in quantum field theory described as perturbations of conformal field theories. The truncation errors of the method have…