相关论文: Topologically Driven Swelling of a Polymer Loop
By using the blob theory and computer simulations, we investigate the properties of a linear polymer performing a stationary rotational motion around a long impenetrable rod. In particular, in the simulations the rotation is induced by a…
The knotting probability is defined by the probability with which an $N$-step self-avoiding polygon (SAP) with a fixed type of knot appears in the configuration space. We evaluate these probabilities for some knot types on a simple cubic…
The topological framework of circuit topology has recently been introduced to complement knot theory and to help in understanding the physics of molecular folding. Naturally evolved linear molecular chains, such as proteins and nucleic…
We consider the statistical mechanics of a system of topologically linked polymers, such as for instance a dense solution of polymer rings. If the possible topological states of the system are distinguished using the Gauss linking number as…
Using a theoretical model we show that ideal ring polymers are stronger depletants than ideal linear polymers of equal radii of gyration, but not of equal hydrodynamic radii. The difference in the depletion-induced force profile is largely…
We discuss the scattering function of a Gaussian random polygon with N nodes under a given topological constraint through simulation. We obtain the Kratky plot of a Gaussian polygon of N=200 having a fixed knot for some different knots such…
Monte Carlo dynamics of the lattice 48 monomers toy protein is interpreted as a random walk in an abstract (discrete) space of conformations. To test the geometry of this space, we examine the return probability $P(T)$, which is the…
Stirring a two-dimensional viscous fluid with rods is often an effective way to mix. The topological features of periodic rod motions give a lower bound on the topological entropy of the induced flow map, since material lines must `catch'…
We explore a web of connections between quantum entanglement and knot theory by examining how topological entanglement entropy probes the braiding data of quasi-particles in Chern-Simons theory, mainly using $SU(2)$ gauge group as our…
Loops are subgraphs responsible for the multiplicity of paths going from one to another generic node in a given network. In this paper we present an analytic approach for the evaluation of the average number of loops in random scale-free…
We propose a novel combinatorial algorithm for efficient generation of Hamiltonian walks and cycles on a cubic lattice, modeling the conformations of lattice toy proteins. Through extensive tests on small lattices (allowing complete…
We study topological properties of random closed curves on an orientable surface $S$ of negative Euler characteristic. Letting $\gamma_{n}$ denote the conjugacy class of the $n^{th}$ step of a simple random walk on the Cayley graph driven…
Understanding how topological constraints affect the dynamics of polymers in solution is at the basis of any polymer theory and it is particularly needed for melts of rings. These polymers fold as crumpled and space-filling objects and,…
The a.s. existence of a polymer probability in the infinite volume limit is readily obtained under general conditions of weak disorder from standard theory on multiplicative cascades or branching random walk. However, speculations in the…
A vortex, a circulating flow around a void, is one of the basic topological phenomena in nature. Here we show that vortices generally emerge in spin wave travelling upon topologically nontrivial magnetic texture, due to the transverse…
The phenomenon of rotation of a vector under parallel transport along a closed path is known as anholonomy. In this paper we have studied the anholonomy for noncontractible loops - closed paths in a curved surface that do not enclose any…
The Pontryagin dual of the twisted Alexander module for a d-component link and GL(N,Z) representation is an algebraic dynamical system with an elementary description in terms of colorings of a diagram. In the case of a knot, its associated…
We develop a theoretical description of the topological disentanglement occurring when torus knots reach the ends of a semi-flexible polymer under tension. These include decays into simpler knots and total unknotting. The minimal number of…
We show that bringing into proximity two topologically trivial systems can give rise to a topological phase. More specifically, we study a 1D metallic nanowire proximitized by a 2D superconducting substrate with a mixed s-wave and p-wave…
We explore the elastic behavior of a wormlike chain under compression in terms of exact solutions for the associated probability densities. Strikingly, the probability density for the end-to-end distance projected along the applied force…