相关论文: Solitons in alpha-helical proteins
We consider the Davydov model of {\alpha}-helix protein chain with both exciton-exciton and excitonphonon couplings and investigate on the evolution of elliptic solitons. In the discrete regime of the adiabatic limit, we analytically and…
Biological order provided by $\alpha$-helical secondary protein structures is an important resource exploitable by living organisms for increasing the efficiency of energy transport. In particular, self-trapping of amide I energy quanta by…
The transport of energy inside protein $\alpha$-helices is studied by deriving a system of quantum equations of motion from the Davydov Hamiltonian with the use of the Schr\"odinger equation and the generalized Ehrenfest theorem.…
Davydov's model of solitons in alpha-helix protein chains is shown to display features of self-organized criticality (SOC), i.e., power law behaviour of correlations in space and 1/f-noise, as a consequence of considering random peptide…
Davydov's model of solitons in alpha-helix protein chains is shown to display features of self-organized criticality (SOC), i.e., power law behaviour of correlations in space and 1/f-noise, as a consequence of considering random peptide…
Protein$\alpha$-helices provide an ordered biological environment that is conducive to soliton-assisted energy transport. The nonlinear interaction between amide I excitons and phonon deformations induced in the hydrogen-bonded lattice of…
It is widely admitted that the helical conformation of certain chiral molecules may induce a sizable spin selectivity observed in experiments. Spin selectivity arises as a result of the interplay between a helicity-induced spin-orbit…
We study stability and dynamics of the single cylindrically symmetric solitary structures and dipolar solitonic molecules in spatially nonlocal media. The main properties of the solitons, vortex solitons, and dipolar solitons are…
We consider a lattice equation (Salerno model) combining onsite self-focusing and intersite self-defocusing cubic terms, which may describe a Bose-Einstein condensate of dipolar atoms trapped in a strong periodic potential. In the continuum…
The vibron dynamics associated to amide-I vibrations in a 3D alpha-helix is described according to a generalized Davydov model. The helix is modeled by three spines of hydrogen-bonded peptide units linked via covalent bonds. To remove the…
In this paper, we employ, for the first time, the holographic gravity approach to investigate the dynamical stability of solitons in spherical superfluids. Transverse perturbations are applied to the background of spherical soliton…
The dynamics of two-component solitons with a small spatial displacement of the high-frequency (HF) component relative to the low-frequency (LF) one is investigated in the framework of the Zakharov-type system. In this system, the evolution…
In this paper an effective integrable non-linear model describing the electron spin dynamics in a deformable helical molecule with weak spin-orbit coupling is presented. Non-linearity arises from the electron-lattice interaction and it…
Heuristic insights into a physical picture of Davydov's solitonic model of the one-dimensional protein chain are presented supporting the idea of a non-equilibrium competition between the Davydov phase and a complementary, dynamical-…
We present a brief overview of the basic concepts of the soliton stability theory and discuss some characteristic examples of the instability-induced soliton dynamics, in application to spatial optical solitons described by the NLS-type…
This paper is concerned with a lattice model which is suited to square-rectangle transformations characterized by two strain components. The microscopic model involves nonlinear and competing interactions, which play a key role in the…
Charge transfer in homogeneous nucleotide chains is modeled on the basis of Holstein Hamiltonian. The path length of Davydov solitons in these chains is being studied. It is shown that in a dispersionless case, when the soliton velocity V…
We construct families of one-dimensional (1D) stable solitons in two-component $\mathcal{PT}$-symmetric systems with spin-orbit coupling (SOC) and quintic nonlinearity, which plays the critical role in 1D setups. The system models light…
A model for soliton dynamics on a hydrogen-bond network in helical proteins is proposed. It employs in three dimensions the formalism of fully integrable Toda lattices which admits phonons as well as solitons along the hydrogen-bonds of the…
We study existence of helical solitons in the vector modified Korteweg-de Vries (mKdV) equations, one of which is integrable, whereas another one is non-integrable. The latter one describes nonlinear waves in various physical systems,…