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The evolution of aligned DNA sequence sites is generally modeled by a Markov process operating along the edges of a phylogenetic tree. It is well known that the probability distribution on the site patterns at the tips of the tree…

种群与进化 · 定量生物学 2013-10-15 Benny Chor , Mike Steel

Data structures known as $k$-d trees have numerous applications in scientific computing, particularly in areas of modern statistics and data science such as range search in decision trees, clustering, nearest neighbors search, local…

数据结构与算法 · 计算机科学 2022-01-21 Aritra Chakravorty , William S. Cleveland , Patrick J. Wolfe

The minimum linear arrangement problem on a network consists of finding the minimum sum of edge lengths that can be achieved when the vertices are arranged linearly. Although there are algorithms to solve this problem on trees in polynomial…

数据分析、统计与概率 · 物理学 2017-12-14 Juan Luis Esteban , Ramon Ferrer-i-Cancho , Carlos Gómez-Rodríguez

In a highly influential paper twenty years ago, Barab\'asi and Albert [Science 286, 509 (1999)] showed that networks undergoing generic growth processes with preferential attachment evolve towards scale-free structures. In any finite…

物理与社会 · 物理学 2020-09-08 Ido Tishby , Ofer Biham , Eytan Katzav

We consider the problem of determining the proportion of edges that are discovered in an Erdos-Renyi graph when one constructs all shortest paths from a given source node to all other nodes. This problem is equivalent to the one of…

The load of a node in a network is the total traffic going through it when every node pair sustains a uniform bidirectional traffic between them on shortest paths. We show that nodal load can be expressed in terms of the more elementary…

统计力学 · 物理学 2008-04-18 Elias Bareinboim , Valmir C. Barbosa

Excitation waves are studied on trees and random networks of coupled active elements. Undamped propagation of such waves is observed in those networks. It represents an excursion from the resting state and a relaxation back to it for each…

斑图形成与孤子 · 物理学 2014-06-12 Nikos E. Kouvaris , Thomas M. Isele , Alexander S. Mikhailov , Eckehard Schoell

We study the large-deviation properties of minimum spanning trees for two ensembles of random graphs with $N$ nodes. First, we consider complete graphs. Second, we study Erd\H{o}s-R\'{e}nyi (ER) random graphs with edge probability $p=c/N$…

无序系统与神经网络 · 物理学 2025-12-16 Mahdi Sarikhani , Alexander K. Hartmann

Barab\'asi-Albert model describes many different natural networks, often yielding sensible explanations to the subjacent dynamics. However, finite size effects may prevent from discerning among different underlying physical mechanisms and…

物理与社会 · 物理学 2016-10-12 Ricardo M. Ferreira , Rita M. C. de Almeida , Leonardo G. Brunnet

In the broadcasting problem on trees, a $\{-1,1\}$-message originating in an unknown node is passed along the tree with a certain error probability $q$. The goal is to estimate the original message without knowing the order in which the…

概率论 · 数学 2025-09-12 Ernst Althaus , Lisa Hartung , Rebecca Steiner

We study a new type of random minimum spanning trees. It is built on the complete graph where each vertex is given a weight, which is a positive real number. Then, each edge is given a capacity which is a random variable that only depends…

概率论 · 数学 2020-12-04 Othmane Safsafi

In usual scale-free networks of Barabasi-Albert type, a newly added node selects randomly m neighbors from the already existing network nodes, proportionally to the number of links these had before. Then the number N(k) of nodes with k…

计算物理 · 物理学 2015-06-04 M. A. Sumour , M. A. Radwan

Motivated by results of Henry, Pralat and Zhang (PNAS 108.21 (2011): 8605-8610), we propose a general scheme for evolving spatial networks in order to reduce their total edge lengths. We study the properties of the equilbria of two networks…

物理与社会 · 物理学 2014-07-17 Chris Varghese , Rick Durrett

We explicitly calculate the distance dependent correlation functions in a maximal entropy ensemble of random trees. We show that correlations remain disassortative at all distances and vanish only as a second inverse power of the distance.…

统计力学 · 物理学 2010-05-04 Piotr Bialas , Andrzej K. Oleś

We define a statistical ensemble of non-degenerate graphs, i.e. graphs without multiple- and self-connections between nodes. The node degree distribution is arbitrary, but the nodes are assumed to be uncorrelated. This completes our earlier…

统计力学 · 物理学 2009-11-07 Z. Burda , A. Krzywicki

As well known the rotation distance D(S,T) between two binary trees S, T of n vertices is the minimum number of rotations of pairs of vertices to transform S into T. We introduce the new operation of chain rotation on a tree, involving two…

数据结构与算法 · 计算机科学 2012-04-27 Fabrizio Luccio , Linda Pagli

Rotation distance between rooted binary trees measures the number of simple operations it takes to transform one tree into another. There are no known polynomial-time algorithms for computing rotation distance. We give an efficient,…

数据结构与算法 · 计算机科学 2018-03-19 Sean Cleary , Katherine St. John

Splay trees are a simple and efficient dynamic data structure, invented by Sleator and Tarjan. The basic primitive for transforming a binary tree in this scheme is a rotation. Sleator, Tarjan, and Thurston proved that the maximum rotation…

离散数学 · 计算机科学 2024-09-27 Claire Mathieu , William Thurston

Is there a constant $r_0$ such that, in any invariant tree network linking rate-$1$ Poisson points in the plane, the mean within-network distance between points at Euclidean distance $r$ is infinite for $r > r_0$? We prove a slightly weaker…

概率论 · 数学 2021-03-02 David J. Aldous

The average distance from a node to all other nodes in a graph, or from a query point in a metric space to a set of points, is a fundamental quantity in data analysis. The inverse of the average distance, known as the (classic) closeness…

社会与信息网络 · 计算机科学 2015-06-29 Shiri Chechik , Edith Cohen , Haim Kaplan