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We show that the TASEP of a driven system of particles of arbitrary size, with nearest neighbor repulsive interaction, on an open lattice is equivalent to the TASEP of interacting monomers on an open lattice whose size fluctuates in…
The symmetric simple exclusion process (SEP) is a paradigmatic model of transport, both in and out-of-equilibrium. In this model, the study of currents and their fluctuations has attracted a lot of attention. In finite systems of arbitrary…
We investigate the totally asymmetric simple exclusion process (TASEP) in the presence of obstacles that dynamically bind and unbind from the lattice. The model is motivated by biological processes such as transcription in the presence of…
We introduce a mean-field theoretical framework to describe multiple totally asymmetric simple exclusion processes (TASEPs) with different lattice lengths, entry and exit rates, competing for a finite reservoir of particles. We present…
We study a continuous-space version of the totally asymmetric simple exclusion process (TASEP), consisting of interacting Brownian particles subject to a driving force in a periodic external potential. Particles are inserted at the leftmost…
A discrete-time totally asymmetric simple exclusion process on a lattice with open boundaries is considered. There are particles of different types. The type of a particle is characterized by the probability that a particle moves to a…
We study the symmetric facilitated exclusion process (FEP) on the finite one-dimensional lattice $\lbrace 1,\dots ,N-1\rbrace$ when put in contact with boundary reservoirs, whose action is subject to an additional kinetic constraint in…
The symmetric simple exclusion process (SEP), where diffusive particles cannot overtake each other, is a paradigmatic model of transport in the single-file geometry. In this model, the study of currents has attracted a lot of attention, but…
We show that in the asymmetric simple exclusion process (ASEP) on a ring, conditioned on carrying a large flux, the particle experience an effective long-range potential which in the limit of very large flux takes the simple form $U=…
In this paper we propose a computational framework for the investigation of the correlated motion between positive and negative ions exposed to the attraction of a bubble surface that mimics the (oscillating) cell membrane. The correlated…
The process of protein synthesis in biological systems resembles a one dimensional driven lattice gas in which the particles (ribosomes) have spatial extent, covering more than one lattice site. Realistic, nonuniform gene sequences lead to…
We consider a family of totally asymmetric simple exclusion processes (TASEPs), consisting of particles on a lattice that require binding by a "token" in various physical configurations to advance over the lattice. Using a combination of…
Treating realistically the ambient water is one of the main difficulties in applying Monte Carlo methods to protein folding. The solvent-accessible area method, a popular method for treating water implicitly, is investigated by means of…
The symmetric simple exclusion process (SEP) is a paradigmatic model of diffusion in a single-file geometry, in which the particles cannot cross. In this model, the study of currents have attracted a lot of attention. In particular, the…
Totally asymmetric exclusion processes (TASEP) with open boundaries are known to exhibit moving shocks or delocalised domain walls (DDW) for sufficiently small equal injection and extraction rates. In contrast TASEPs in an inhomogeneous…
We revisit a totally asymmetric simple exclusion process (TASEP) with open boundaries and a global constraint on the total number of particles [Adams, et. al. 2008 J. Stat. Mech. P06009]. In this model, the entry rate of particles into the…
Totally asymmetric simple exclusion processes (TASEP) with particles which occupy more than one lattice site and with a local inhomogeneity far away from the boundaries are investigated. These non-equilibrium processes are relevant for the…
The asymmetric simple exclusion process (ASEP) is a model for translation in protein synthesis and traffic flow; it can be defined as a Markov chain describing particles hopping on a one-dimensional lattice. In this article I give an…
We consider a finite one-dimensional totally asymmetric simple exclusion process (TASEP) with four types of particles, $\{1,0,\bar{1},*\}$, in contact with reservoirs. Particles of species $0$ can neither enter nor exit the lattice, and…
We show that the known matrix representations of the stationary state algebra of the Asymmetric Simple Exclusion Process (ASEP) can be interpreted combinatorially as various weighted lattice paths. This interpretation enables us to use the…