相关论文: Topology and Algebra of Bonded Knots and Braids
Bonded knots arise naturally in topological protein modeling, where intramolecular interactions such as disulfide bridges stabilize folded configurations. These structures extend classical knot theory by incorporating embedded graphs, and…
We present a systematic classification of uncolored bonded knots with singularity number at most seven. Bonded knots provide a topological model for closed protein chains with intramolecular bridges, such as disulfide bonds. Following the…
Tied links and the tied braid monoid were introduced recently by the authors and used to define new invariants for classical links. Here, we give a version purely algebraic-combinatoric of tied links. With this new version we prove that the…
We present a topological interpretation of knot and braid contact homology in degree zero, in terms of cords and skein relations. This interpretation allows us to extend the knot invariant to embedded graphs and higher-dimensional knots. We…
This paper is a survey on the theory of knotoids and braidoids. Knotoids are open ended knot diagrams in surfaces and braidoids are geometric objects analogous to classical braids, forming a counterpart theory to the theory of knotoids in…
We prove that the so-called t algebra of braids and ties supports a Markov trace. Further, by using this trace in the Jones' recipe, we define invariant polynomials for classical knots and singular knots. Our invariants have three…
This manuscript introduces a new framework for the study of knots by exploring the neighborhood of knot embeddings in the space of simple open and closed curves in 3-space. The latter gives rise to a knotoid spectrum, which determines the…
We construct new knot polynomials. Let $V$ be the standard solid torus in 3-space and let $pr$ be its standard projection onto an annulus. Let $M$ be the space of all smooth oriented knots in $V$ such that the restriction of $pr$ is an…
We introduce topological invariants of knots and braid conjugacy classes, in the form of differential graded algebras, and present an explicit combinatorial formulation for these invariants. The algebras conjecturally give the relative…
We model proteins with intramolecular bonds, such as disulfide bridges, using the concept of bonded knots -- closed loops in three-dimensional space equipped with additional bonds that connect different segments of the knot. We extend the…
A polynomial is presented that models a topological knot in a unique manner. It distinguishes all types of knots including the orientation and has a group theory interpretation. The topologies may be labeled via a number, which upon a base…
Recent work suggests that topological features of certain quantum gravity theories can be interpreted as particles, matching the known fermions and bosons of the first generation in the Standard Model. This is achieved by identifying…
A polynomial knot in $\mathbb{R}^n$ is a smooth embedding of $\mathbb{R}$ in $\mathbb{R}^n$ such that the component functions are real polynomials. In the earlier paper with Mishra, we have studied the space $\mathcal{P}$ of polynomial…
By using the notion of a rigid R-matrix in a monoidal category and the Reshetikhin--Turaev functor on the category of tangles, we review the definition of the associated invariant of long knots. In the framework of the monoidal categories…
The notion of a braided chord diagram is introduced and studied. An equivalence relation is given which identifies all braidings of a fixed chord diagram. It is shown that finite-type invariants are stratified by braid index for knots which…
We define a new algebraic structure called a \emph{pointed rack} and use it to construct ambient isotopy invariants of $ n $-braids. We first introduce an integer-valued invariant of braids using pointed racks. This is then strengthened by…
The deep connection among braids, knots and topological physics has provided valuable insights into studying topological states in various physical systems. However, identifying distinct braid groups and knot topology embedded in…
Ropelength and embedding thickness are related measures of geometric complexity of classical knots and links in Euclidean space. In their recent work, Freedman and Krushkal posed a question regarding lower bounds for embedding thickness of…
Proteins are linear molecular chains that often fold to function. The topology of folding is widely believed to define its properties and function, and knot theory has been applied to study protein structure and its implications. More that…
We extend knot contact homology to a theory over the ring $\mathbb{Z}[\lambda^{\pm 1},\mu^{\pm 1}]$, with the invariant given topologically and combinatorially. The improved invariant, which is defined for framed knots in $S^3$ and can be…