相关论文: The space writhes and signatures of polymer knots
The ropelength of a knot is the minimum length required to tie it. Computational upper bounds have previously been computed for every prime knot with up to 11 crossings. Here, we present ropelength measurements for the 2176 knots with 12…
The role of the topology and its relation with the geometry of biopolymers under different physical conditions is a nontrivial and interesting problem. Aiming at understanding this issue for a related simpler system, we use Monte Carlo…
Stochastic simulations are used to characterize the knotting distributions of random ring polymers confined in spheres of various radii. The approach is based on the use of multiple Markov chains and reweighting techniques, combined with…
Inspired by how certain proteins "sense" knots and entanglements in DNA molecules, here we ask if there exist local geometric features that may be used as a read-out of the underlying topology of generic polymers. We perform molecular…
One measure of geometrical complexity of a spatial curve is the number of crossings in a planar projection of the curve. For $N$-noded ring polymers with a fixed knot type, we evaluate numerically the average of the crossing number over…
We discuss an "extrinsic" property of knots in a 3-subspace of the 3-sphere $S^3$ to characterize how the subspace is embedded in $S^3$. Specifically, we show that every knot in a subspace of the 3-sphere is transient if and only if the…
Given a knot K in the 3-sphere, consider a singular disk bounded by K and the intersections of K with the interior of the disk. The absolute number of intersections, minimised over all choices of singular disk with a given algebraic number…
The probability of a random polygon (or a ring polymer) having a knot type $K$ should depend on the complexity of the knot $K$. Through computer simulation using knot invariants, we show that the knotting probability decreases exponentially…
Simple closed curves in the plane can be mapped to nontrivial knots under the action of origami foldings that allow the paper to self-intersect. We show all tame knot types may be produced in this manner, motivating the development of a new…
The presence of slipknots in configurations of proteins and DNA has been shown to affect their functionality, or alter it entirely. Historically, polymers are modeled as polygonal chains in space. As an alternative to space curves, we…
A minimal knot is the intersection of a topologically embedded branched minimal disk in $\mathbb{R}^4$ $\mathbb{C}^2 $ with a small sphere centered at the branch point. When the lowest order terms in each coordinate component of the…
A polynomial knot is a smooth embedding $\kappa: \real \to \real^n$ whose components are polynomials. The case $n = 3$ is of particular interest. It is both an object of real algebraic geometry as well as being an open ended topological…
It is known that each knot has a semimeander diagram (i. e. a diagram composed of two smooth simple arcs), however the number of crossings in such a diagram can only be roughly estimated. In the present paper we provide a new estimate of…
We introduce and explore the relation between knot invariants and quiver representation theory, which follows from the identification of quiver quantum mechanics in D-brane systems representing knots. We identify various structural…
A virtual knot, which is one of generalizations of knots in $\mathbb{R}^{3}$ (or $S^{3}$), is, roughly speaking, an embedded circle in thickened surface $S_{g} \times I$. In this paper we will discuss about knots in 3 dimensional $S_{g}…
We present computer simulations to examine probability distributions of gyration radius for the no-thickness closed polymers of N straight segments of equal length. We are particularly interested in the conditional distributions when the…
In order to model entanglements of polymers in a confined region, we consider the linking numbers and writhes of cycles in random linear embeddings of complete graphs in a cube. Our main results are that for a random linear embedding of…
Knots are deeply entangled with every branch of science. One of the biggest open challenges in knot theory is to formalise a knot invariant that can unambiguously and efficiently distinguish any two knotted curves. Additionally, the…
We introduce and study the writhe of a permutation, a circular variant of the well-known inversion number. This simple permutation statistics has several interpretations, which lead to some interesting properties. For a permutation sampled…
Besides mathematical interest, knots and knot theory have important applications in physics, chemistry, and biology. Stasiak and colleagues devised a constructive method for a knot "energy" using a Metropolis Monte Carlo algorithm to…