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Many epidemic processes in networks spread by stochastic contacts among their connected vertices. There are two limiting cases widely analyzed in the physics literature, the so-called contact process (CP) where the contagion is expanded at…

计算物理 · 物理学 2010-02-19 S. Gomez , A. Arenas , J. Borge-Holthoefer , S. Meloni , Y. Moreno

We develop a stochastic epidemic model progressing over dynamic networks, where infection rates are heterogeneous and may vary with individual-level covariates. The joint dynamics are modeled as a continuous-time Markov chain such that…

统计方法学 · 统计学 2021-12-16 Fan Bu , Allison E. Aiello , Alexander Volfovsky , Jason Xu

Epidemic spreading of infectious diseases is ubiquitous and has often considerable impact on public health and economic wealth. The large variability in spatio-temporal patterns of epidemics prohibits simple interventions and demands for a…

种群与进化 · 定量生物学 2010-11-25 Christel Kamp

The mathematical model of the spread of the epidemic is developed, which considers fluctuations in the number of human social contacts. The model is based on the logistic equation. The oscillation in the number of social contacts within one…

物理与社会 · 物理学 2021-06-01 S. P. Fisenko , P. S. Grinchuk

Infectious disease outbreaks have precipitated a profusion of mathematical models. Epidemic curves predicted by these models are typically qualitatively similar, despite distinct model assumptions, but there is no theoretical explanation…

种群与进化 · 定量生物学 2026-02-23 David J. D. Earn , Todd L. Parsons

In this paper we propose a Stochastic model for studying a spatial cholera epidemic spreading where communities (Humans and Bacteria) are spatially distributed on a one-dimensional lattice and the bacteria are transported along a network…

概率论 · 数学 2020-07-23 Boris Kouegou Kamen , Mac Jugal Nguepedja Nankep

We consider a continuous-time Markov chain model of SIR disease dynamics with two levels of mixing. For this so-called stochastic households model, we provide two methods for inferring the model parameters---governing within-household…

种群与进化 · 定量生物学 2018-02-07 James N. Walker , Joshua V. Ross , Andrew J. Black

The COVID-19 pandemic has led to significant changes in how people are currently living their lives. To determine how to best reduce the effects of the pandemic and start reopening societies, governments have drawn insights from…

其他定量生物学 · 定量生物学 2020-09-08 Heather Z. Brooks , Unchitta Kanjanasaratool , Yacoub H. Kureh , Mason A. Porter

Intuitively, sampling is likely to be more efficient for prevalence estimation, if the cases (or positives) have a relatively higher representation in the sample than in the population. In case the virus is transmitted via personal…

应用统计 · 统计学 2020-11-18 Li-Chun Zhang

Classical compartmental models in epidemiology often assume a homogeneous population for simplicity, which neglects the inherent heterogeneity among individuals. This assumption frequently leads to inaccurate predictions when applied to…

种群与进化 · 定量生物学 2024-09-09 Ning Jiang , Weiqi Chu , Yao Li

In this work we look at several mathematical models that have been constructed during the present pandemic to address dfferent issues of importance to public health policies about epidemic scenarios and thier causes. We start by briefly…

种群与进化 · 定量生物学 2021-04-19 Jorge X. Velasco-Hernandez

Stochastic compartmental models are important tools for understanding the course of infectious diseases epidemics in populations and in prospective evaluation of intervention policies. However, calculating the likelihood for discretely…

统计计算 · 统计学 2018-07-26 Lam Si Tung Ho , Forrest W. Crawford , Marc A. Suchard

Compartmental epidemic models have been widely used for predicting the course of epidemics, from estimating the basic reproduction number to guiding intervention policies. Studies commonly acknowledge these models' assumptions but less…

种群与进化 · 定量生物学 2022-11-23 Alexander F. Siegenfeld , Pratyush K. Kollepara , Yaneer Bar-Yam

Stochastic mathematical models are essential tools for understanding and predicting complex phenomena. The purpose of this work is to study the exit times of a stochastic dynamical system-specifically, the mean exit time and the…

概率论 · 数学 2025-08-06 Eric José Ávila-Vales , José Villa-Morales

Emerging epidemics and local infection clusters are initially prone to stochastic effects that can substantially impact the epidemic trajectory. While numerous studies are devoted to the deterministic regime of an established epidemic,…

种群与进化 · 定量生物学 2021-09-20 Peter Czuppon , Emmanuel Schertzer , François Blanquart , Florence Débarre

In this paper we consider a model for the spread of a stochastic SIR (Susceptible $\to$ Infectious $\to$ Recovered) epidemic on a network of individuals described by a random intersection graph. Individuals belong to a random number of…

概率论 · 数学 2014-04-29 Frank G. Ball , David J. Sirl , Pieter Trapman

Our chances to halt epidemic outbreaks rely on how accurately we represent the population structure underlying the disease spread. When analyzing global epidemics this force us to consider metapopulation models taking into account intra-…

种群与进化 · 定量生物学 2007-12-10 Alexei Vazquez

We study the early stages of viral infection, and the distribution of times to obtain a persistent infection. The virus population proliferates by entering and reproducing inside a target cell until a sufficient number of new virus…

种群与进化 · 定量生物学 2019-07-11 Carmel Sagi , Michael Assaf

Many epidemic models are naturally defined as individual-based models: where we track the state of each individual within a susceptible population. Inference for individual-based models is challenging due to the high-dimensional state-space…

统计方法学 · 统计学 2025-08-04 Lorenzo Rimella , Christopher Jewell , Paul Fearnhead

We study the problem of estimating the parameters (i.e., infection rate and recovery rate) governing the spread of epidemics in networks. Such parameters are typically estimated by measuring various characteristics (such as the number of…

系统与控制 · 电气工程与系统科学 2021-05-12 Lintao Ye , Philip E. Paré , Shreyas Sundaram