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Despite their apparent simplicity, random Boolean networks display a rich variety of dynamical behaviors. Much work has been focused on the properties and abundance of attractors. We here derive an expression for the number of attractors in…

分子网络 · 定量生物学 2007-05-23 Björn Samuelsson , Carl Troein

This paper considers the problem of inferring an unknown network of dynamical systems driven by unknown, intrinsic, noise inputs. Equivalently we seek to identify direct causal dependencies among manifest variables only from observations of…

系统与控制 · 计算机科学 2014-12-22 David Hayden , Ye Yuan , Jorge Goncalves

Degeneracy is the ability of structurally different elements to perform the same function or yield the same output under certain constraints. In contrast to redundancy, which implies identical backups, degeneracy allows diverse components…

网络与互联网体系结构 · 计算机科学 2025-06-26 Indrakshi Dey , Nicola Marchetti

Network coherence generally refers to the emergence of simple aggregated dynamical behaviours, despite heterogeneity in the dynamics of the subsystems that constitute the network. In this paper, we develop a general frequency domain…

系统与控制 · 电气工程与系统科学 2023-02-17 Hancheng Min , Richard Pates , Enrique Mallada

We study a generic family of nonlinear dynamics on undirected networks generalising linear consensus. We find a compact expression for its equilibrium points in terms of the topology of the network and classify their stability using the…

动力系统 · 数学 2021-12-07 Marc Homs-Dones , Karel Devriendt , Renaud Lambiotte

Empirical estimation of critical points at which complex systems abruptly flip from one state to another is among the remaining challenges in network science. However, due to the stochastic nature of critical transitions it is widely…

社会与信息网络 · 计算机科学 2014-07-09 B. Podobnik , T. Lipic , D. Horvatic , A. Majdandzic , S. Bishop , H. E. Stanley

We present a computational method for performing structural translation, which has been studied recently in the context of analyzing the steady states and dynamical behavior of mass-action systems derived from biochemical reaction networks.…

最优化与控制 · 数学 2018-08-29 Matthew D. Johnston , Evan Burton

We consider damped elastodynamic networks where the damping matrix is assumed to be a non-negative linear combination of the stiffness and mass matrices (also known as Rayleigh or proportional damping). We give here a characterization of…

数学物理 · 物理学 2015-06-03 Alessandro Gondolo , Fernando Guevara Vasquez

Bounded weak solutions to a particular class of degenerate parabolic cross-diffusion systems are shown to coincide with the unique strong solution determined by the same initial condition on the maximal existence interval of the latter. The…

偏微分方程分析 · 数学 2022-07-04 Philippe Laurençot , Bogdan-Vasile Matioc

I study dynamic network formation games in which agents meet stochastically and form links based on their valuation of the network. I show that these games can be represented in terms of the values agents assign to network sub-structures.…

理论经济学 · 经济学 2025-11-19 Jose M. Betancourt

The paper deals with the problem of reconstructing the topological structure of a network of dynamical systems. A distance function is defined in order to evaluate the "closeness" of two processes and a few useful mathematical properties…

混沌动力学 · 物理学 2008-12-02 Donatello W. Materassi , Giacomo W. Innocenti

Despite their topological complexity almost all functional properties of metabolic networks can be derived from steady-state dynamics. Indeed, many theoretical investigations (like flux-balance analysis) rely on extracting function from…

分子网络 · 定量生物学 2009-11-13 Carsten Marr , Mark Mueller-Linow , Marc-Thorsten Huett

Complex systems such as ecological communities and neuron networks are essential parts of our everyday lives. These systems are composed of units which interact through intricate networks. The ability to predict sudden changes in the…

适应与自组织系统 · 物理学 2021-07-07 Deniz Eroglu , Matteo Tanzi , Sebastian van Strien , Tiago Pereira

What networks can form and persist when agents are self-interested? Can such networks be efficient? A substantial theoretical literature predicts that the only networks that can form and persist must have very special shapes and that such…

计算机科学与博弈论 · 计算机科学 2015-09-03 Yangbo Song , Mihaela van der Schaar

In an increasingly connected world, the resilience of networked dynamical systems is important in the fields of ecology, economics, critical infrastructures, and organizational behaviour. Whilst we understand small-scale resilience well,…

适应与自组织系统 · 物理学 2018-08-21 Giannis Moutsinas , Weisi Guo

In this paper we propose a causal analog to the purely observational Dynamic Bayesian Networks, which we call Dynamic Causal Networks. We provide a sound and complete algorithm for identification of Dynamic Causal Net- works, namely, for…

人工智能 · 计算机科学 2016-10-19 Gilles Blondel , Marta Arias , Ricard Gavaldà

This paper considers dynamic networks where vertices and edges represent manifest signals and causal dependencies among the signals, respectively. We address the problem of how to determine if the dynamics of a network can be identified…

最优化与控制 · 数学 2021-05-10 Xiaodong Cheng , Shengling Shi , Ioannis Lestas , Paul M. J. Van den Hof

The quasi-steady state approximation and time-scale separation are commonly applied methods to simplify models of biochemical reaction networks based on ordinary differential equations (ODEs). The concentrations of the "fast" species are…

动力系统 · 数学 2016-05-10 Meritxell Sáez , Carsten Wiuf , Elisenda Feliu

Chemical reaction network theory is a powerful framework to describe and analyze chemical systems. While much about the concentration profile in an equilibrium state can be determined in terms of the graph structure, the overall reaction's…

分子网络 · 定量生物学 2024-02-29 Tomoharu Suda

Branching and weak probabilistic bisimilarities are two well-known notions capturing behavioral equivalence between nondeterministic probabilistic systems. For probabilistic systems, divergence is of major concern. Recently several…

计算机科学中的逻辑 · 计算机科学 2024-12-31 Hao Wu , Yuxi Fu , Huan Long , Xian Xu , Wenbo Zhang