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Multiscale and inhomogeneous molecular systems are challenging topics in the field of molecular simulation. In particular, modeling biological systems in the context of multiscale simulations and exploring material properties are driving a…

计算物理 · 物理学 2017-12-06 Horacio V. Guzman , Christoph Junghans , Kurt Kremer , Torsten Stuehn

We present a novel approach which aims at high-performance uncertainty quantification for cardiac electrophysiology simulations. Employing the monodomain equation to model the transmembrane potential inside the cardiac cells, we evaluate…

The two-scale computational homogenization method is proposed for modelling of locally periodic fluid-saturated media subjected a to large deformation induced by quasistatic loading. The periodic heterogeneities are relevant to the…

数值分析 · 数学 2022-02-11 Vladimír Lukeš , Eduard Rohan

Simulation in media with multiple continua where each continuum interacts with every other is often challenging due to multiple scales and high contrast. One needs some types of model reduction. One of the approaches is multi-continuum…

数值分析 · 数学 2019-06-12 Jun Sur Richard Park , Viet Ha Hoang

The paper deals with the homogenization of deformable porous media saturated by two-component electrolytes. The model relevant to the microscopic scale describes steady states of the medium while reflecting essential physical phenomena,…

计算物理 · 物理学 2019-01-25 Jana Turjanicová , Eduard Rohan , Vladimír Lukeš

A model of multicellular systems with several types of cells is developed from the phase field model. The model is presented as a set of partial differential equations of the field variables, each of which expresses the shape of one cell.…

生物物理 · 物理学 2015-05-30 Makiko Nonomura

We present a novel microscopic tridomain model describing the electrical activity in cardiac tissue with dynamical gap junctions. The microscopic tridomain system consists of three PDEs modeling the tissue electrical conduction in the…

偏微分方程分析 · 数学 2022-06-01 Fakhrielddine Bader , Mostafa Bendahmane , Mazen Saad , Raafat Talhouk

Asymptotic multiple scale homogenisation allows to determine the effective behaviour of a porous medium by starting from the pore-scale description, when there is a large separation between the pore-scale and the macroscopic scale. When the…

经典物理 · 物理学 2019-03-06 Pascale Royer

The macroscopic behavior of the solution of a coupled system of partial differential equations arising in the modeling of reaction-diffusion processes in periodic porous media is analyzed. Our mathematical model can be used for studying…

偏微分方程分析 · 数学 2019-06-19 G. Cardone , C. Perugia , C. Timofte

A major challenge in flow through porous media is to better understand the link between microstructure and macroscale flow and transport. For idealised microstructures, the mathematical framework of homogenisation theory can be used for…

This article reviews the mechanical bidomain model, a mathematical description how the extracellular matrix and intracellular cytoskeleton are coupled by integrin proteins. The fundamental hypothesis is that differences between…

生物物理 · 物理学 2016-11-28 Bradley J. Roth

The Extracellular-Membrane-Intracellular (EMI) model is a novel mathematical framework for cardiac electrophysiology simulations. The EMI model provides a more detailed description of the heart's electrical activity compared to traditional…

数值分析 · 数学 2025-04-29 Carlos Ballesteros , Alexei Cheviakov , Raymond J. Spiteri

We analyze a Balancing Domain Decomposition by Constraints (BDDC) preconditioner for the solution of three dimensional composite Discontinuous Galerkin discretizations of reaction-diffusion systems of ordinary and partial differential…

In this paper, we study a multiscale method for simulating a dual-continuum unsaturated flow problem within complex heterogeneous fractured porous media. Mathematically, each of the dual continua is modeled by a multiscale Richards equation…

数值分析 · 数学 2021-06-03 Jun Sur Richard Park , Siu Wun Cheung , Tina Mai

The paper is devoted to the homogenization of porous piezoelectric materials saturated by electrically inert fluid. The solid part of a representative volume element consists of the piezoelectric skeleton with embedded conductors. The pore…

计算物理 · 物理学 2018-08-01 Eduard Rohan , Vladimír Lukeš

In this paper we consider the monodomain model of cardiac electrophysiology. After an analysis of the well-posedness of the model, we determine an asymptotic expansion of the perturbed potential due to the presence of small conductivity…

偏微分方程分析 · 数学 2020-10-28 Elena Beretta , Cecilia Cavaterra , Luca Ratti

We propose a boundary element method for the accurate solution of the cell-by-cell bidomain model of electrophysiology. The cell-by-cell model, also called Extracellular-Membrane-Intracellular (EMI) model, is a system of reaction-diffusion…

数值分析 · 数学 2024-06-28 Giacomo Rosilho de Souza , Rolf Krause , Simone Pezzuto

This paper presents a nonlinear reaction-diffusion-fluid system that simulates radiofrequency ablation within cardiac tissue. The model conveys the dynamic evolution of temperature and electric potential in both the fluid and solid regions,…

数值分析 · 数学 2024-05-03 Mostafa Bendahmane , Youssef Ouakrim , Yassine Ouzrour , Mohamed Zagour

In this paper, we discuss a general framework for multicontinuum homogenization. Multicontinuum models are widely used in many applications and some derivations for these models are established. In these models, several macroscopic…

数值分析 · 数学 2023-09-18 E. Chung , Y. Efendiev , J. Galvis , W. T. Leung

When modelling tissue-level cardiac electrophysiology, continuum approximations to the discrete cell-level equations are used to maintain computational tractability. One of the most commonly used models is represented by the bidomain…

计算工程、金融与科学 · 计算机科学 2012-08-22 Doug Bruce , Pras Pathmanathan , Jonathan P. Whiteley