相关论文: Sequence Reconstruction Problem for Deletion Chann…

A sequence of positive integers $(a_1,a_2,\ldots,a_k)$ is called $\ell$-additive if $a_1+a_2+\cdots+a_k=\ell a_1$ or $\ell a_k$. In this paper, we prove that for all $k\geq3$, if $n$ is sufficiently large, then every permutation of…

This paper studies the problem of encoding messages into sequences which can be uniquely recovered from some noisy observations about their substrings. The observed reads comprise consecutive substrings with some given minimum overlap. This…

We propose new repair schemes for Reed-Solomon codes that use subspace polynomials and hence generalize previous works in the literature that employ trace polynomials. The Reed-Solomon codes are over $\mathbb{F}_{q^\ell}$ and have…

We determine the minimal experimental resources that ensure a unique solution in the estimation of trace-preserving quantum channels with both direct and convex optimization methods. A convenient parametrization of the constrained set is…

We develop upper bounds on code size for an independent and identically distributed deletion and insertion channels for a given code length and target frame error probability. The bounds are obtained as a variation of a general converse…

Finding deletion-correcting codes of maximum size has been an open problem for over 70 years, even for a single deletion. In this paper, we propose a novel approach for constructing deletion-correcting codes. A code is a set of sequences…

Mean-based reconstruction is a fundamental, natural approach to worst-case trace reconstruction over channels with synchronization errors. It is known that $\exp(O(n^{1/3}))$ traces are necessary and sufficient for mean-based worst-case…

Consider a binary word being transmitted through a communication channel that introduces deletable errors where each bit of the word is either retained, flipped, erased or deleted. The simplest code for correcting \emph{all} possible…

The sequence reconstruction problem asks for the recovery of a sequence from multiple noisy copies, where each copy may contain up to $r$ errors. In the case of permutations on \(n\) letters under the Hamming metric, this problem is closely…

In the deletion channel, an important problem is to determine the number of subsequences derived from a string $U$ of length $n$ when subjected to $t$ deletions. It is well-known that the number of subsequences in the setting exhibits a…

An indel refers to a single insertion or deletion, while an edit refers to a single insertion, deletion or substitution. In this paper, we investigate codes that combat either a single indel or a single edit and provide linear-time…

The Scholz conjecture on addition chains states that $\ell(2^n-1) \leq \ell(n) + n -1$ for all integers $n$ where $\ell(n)$ stands for the minimal length of all addition chains for $n$. It is proven to hold for infinite sets of integers. In…

One peculiarity with deletion-correcting codes is that perfect $t$-deletion-correcting codes of the same length over the same alphabet can have different numbers of codewords, because the balls of radius $t$ with respect to the…

The construction of deletion codes for the Levenshtein metric is reduced to the construction of codes over the integers for the Manhattan metric by run length coding. The latter codes are constructed by expurgation of translates of…

For a numerical semigroup $S := \langle n_1, \dots, n_k \rangle$ with minimal generators $n_1 < \cdots < n_k$, Barron, O'Neill, and Pelayo showed that $L(s+n_1) = L(s) + 1$ and $\ell(s+n_k) = \ell(s) + 1$ for all sufficiently large $s \in…

Motivated by DNA storage systems and 3D fingerprinting, this work studies the adversarial torn paper channel with edit errors. This channel first applies at most $t_e$ edit errors (i.e., insertions, deletions, and substitutions) to the…

The evolution, as functions of the "ticking time" $\ell =0,1,2,...$, of the solutions of the system of $N$ quadratic recursions \begin{eqnarray*} x_{n}\left( \ell +1\right) =c_{n}+\sum_{m=1}^{N}\left[ C_{nm}x_{m}\left( \ell \right) \right]…

We explore the use of the recently proposed "total nuclear variation" (TNV) as a regularizer for reconstructing multi-channel, spectral CT images. This convex penalty is a natural extension of the total variation (TV) to vector-valued…

We study codes that can correct backtracking errors during nanopore sequencing. In this channel, a sequence of length $n$ over an alphabet of size $q$ is being read by a sliding window of length $\ell$, where from each window we obtain only…

An addition chain for $n$ is defined to be a sequence $(a_0,a_1,\ldots,a_r)$ such that $a_0=1$, $a_r=n$, and, for any $1\le k\le r$, there exist $0\le i, j<k$ such that $a_k = a_i + a_j$; the number $r$ is called the length of the addition…