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Despite the obvious similarities between the metrics used in topological data analysis and those of optimal transport, an optimal-transport based formalism to study persistence diagrams and similar topological descriptors has yet to come.…

计算几何 · 计算机科学 2024-05-29 Vincent Divol , Théo Lacombe

The stability of persistence diagrams is among the most important results in applied and computational topology. Most results in the literature phrase stability in terms of the bottleneck distance between diagrams and the $\infty$-norm of…

代数拓扑 · 数学 2025-07-11 Primoz Skraba , Katharine Turner

We introduce a refinement of the persistence diagram, the graded persistence diagram. It is the Mobius inversion of the graded rank function, which is obtained from the rank function using the unary numeral system. Both persistence diagrams…

代数拓扑 · 数学 2022-05-09 Leo Betthauser , Peter Bubenik , Parker B. Edwards

Recent years have witnessed a tremendous growth using topological summaries, especially the persistence diagrams (encoding the so-called persistent homology) for analyzing complex shapes. Intuitively, persistent homology maps a potentially…

计算几何 · 计算机科学 2021-04-19 Samantha Chen , Yusu Wang

\v{C}ech Persistence diagrams (PDs) are topological descriptors routinely used to capture the geometry of complex datasets. They are commonly compared using the Wasserstein distances $OT_{p}$; however, the extent to which PDs are stable…

计算几何 · 计算机科学 2024-07-15 Charles Arnal , David Cohen-Steiner , Vincent Divol

Motivated by persistent homology and topological data analysis, we consider formal sums on a metric space with a distinguished subset. These formal sums, which we call persistence diagrams, have a canonical 1-parameter family of metrics…

代数拓扑 · 数学 2025-02-19 Peter Bubenik , Iryna Hartsock

Topological Data Analysis methods can be useful for classification and clustering tasks in many different fields as they can provide two dimensional persistence diagrams that summarize important information about the shape of potentially…

量子物理 · 物理学 2024-09-02 Bernardo Ameneyro , Rebekah Herrman , George Siopsis , Vasileios Maroulas

This paper presents a generalization of the Wasserstein distance for both persistence diagrams and merge trees [20], [66] that takes advantage of the regions of their topological features in the input domain. Specifically, we redefine the…

图形学 · 计算机科学 2025-10-21 Mathieu Pont , Christoph Garth

Persistence diagrams are common descriptors of the topological structure of data appearing in various classification and regression tasks. They can be generalized to Radon measures supported on the birth-death plane and endowed with an…

计算几何 · 计算机科学 2022-12-19 Alex Elchesen , Iryna Hartsock , Jose A. Perea , Tatum Rask

Distances have a ubiquitous role in persistent homology, from the direct comparison of homological representations of data to the definition and optimization of invariants. In this article we introduce a family of parametrized pseudometrics…

代数拓扑 · 数学 2024-08-23 Jens Agerberg , Andrea Guidolin , Isaac Ren , Martina Scolamiero

We prove that persistence diagrams with the p-Wasserstein distance form the universal p-subadditive commutative monoid on an underlying metric space with a distinguished subset. This result applies to persistence diagrams, barcodes, and to…

代数拓扑 · 数学 2025-02-19 Peter Bubenik , Alex Elchesen

Barcodes form a complete set of invariants for interval decomposable persistence modules and are an important summary in topological data analysis. The set of barcodes is equipped with a canonical one-parameter family of metrics, the…

代数拓扑 · 数学 2025-11-20 Wanchen Zhao , Peter Bubenik

Persistence diagrams are a useful tool from topological data analysis which can be used to provide a concise description of a filtered topological space. What makes them even more useful in practice is that they come with a notion of a…

计算几何 · 计算机科学 2018-11-05 Jesse J. Berwald , Joel M. Gottlieb , Elizabeth Munch

Topological Data Analysis (TDA) is an approach to handle with big data by studying its shape. A main tool of TDA is the persistence diagram, and one can use it to compare data sets. One approach to learn on the similarity between two…

应用统计 · 统计学 2020-03-04 Sarit Agami

Optimal transport has gained much attention in image processing field, such as computer vision, image interpolation and medical image registration. Recently, Bredies et al. (ESAIM:M2AN 54:2351-2382, 2020) and Schmitzer et al. (IEEE T MED…

数值分析 · 数学 2023-08-21 Yiming Gao

We introduce persistence spheres, a novel functional representation of persistence diagrams. Unlike existing embeddings (such as persistence images, landscapes, or kernel methods), persistence spheres provide a bi-continuous mapping: they…

机器学习 · 计算机科学 2025-10-01 Matteo Pegoraro

We study transport distances on metric graphs representing gas networks. Starting from the dynamic formulation of the Wasserstein distance, we review extensions to networks, with and without the possibility of storing mass on the vertices.…

偏微分方程分析 · 数学 2026-01-22 Martin Burger , Ariane Fazeny , Gilles Mordant , Jan-Frederik Pietschmann

In topological data analysis (TDA), persistence diagrams have been a succesful tool. To compare them, Wasserstein and Bottleneck distances are commonly used. We address the shortcomings of these metrics and show a way to investigate them in…

计算几何 · 计算机科学 2024-09-27 Paweł Dłotko , Niklas Hellmer

Paths of persistence diagrams provide a summary of the dynamic topological structure of a one-parameter family of metric spaces. These summaries can be used to study and characterize the dynamic shape of data such as swarming behavior in…

代数拓扑 · 数学 2023-11-17 Chad Giusti , Darrick Lee

The problem of computing topological distance between two scalar fields based on Reeb graphs or contour trees has been studied and applied successfully to various problems in topological shape matching, data analysis, and visualization.…

图形学 · 计算机科学 2023-09-12 Yashwanth Ramamurthi , Amit Chattopadhyay
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